GO term distribution among the annotated BAC sequences.

<p><b>(A)</b> According to biological processes; (<b>B)</b> According to molecular functions; and <b>(C)</b> According to cellular components.</p

Species distribution.

<p>Based on the number of BLAST hits for predicted genes, <i>T</i>. <i>virens</i> is the species with the most similarity to <i>T</i>. <i>harzianum</i>.</p

Insert size distribution in the <i>T</i>. <b><i>harzianum</i> IOC-3844 BAC library</b>.

<p>Sixty randomly selected BAC clones were digested by <i>Not</i>I. The insert size ranged from 35 to 180 kbp, with an average size of 90 kbp.</p

Hierarchical clustering of CAZy genes.

<p>CAZy sequences were mapped against transcriptome reads and divided into 5 transcript groups according to expression levels. Group IV contains the most highly expressed sequences, and group I contains the sequences with the lowest expression.</p

Schematic model of CAZy and co-regulated genes.

<p>CAZy genes are indicated with color-filled arrows. Co-regulated non-CAZy genes are indicated by white arrows with contours of the same color as those of CAZy genes with similar profiles. Similar colors indicate a similar expression profile. (A) The region of the Egl1 BAC containing Egl1 and a gene encoding a GH71 family protein, which exhibit similar expression profiles. (B) The region of the Egl2 BAC containing a GH3 family protein, an Egl2 gene, and a GH79 protein. (C) The region of the Egl3 BAC containing 5 CAZy genes: CE16, GT90, Egl3, CH37, and GT17. (D) The region of the Bgl2 BAC that contains only one CAZy, the Bgl2 gene. (E) The Cbh1 BAC, demonstrating that Cbh1 and swollenin are co-induced. Two other CAZy genes (GH92 and GCase) are also present. (F) The region of the Xyn2 BAC containing a GH27 protein and <i>Xy2</i>.</p