MOESM1 of Empirical determination of breed-of-origin of alleles in three-breed cross pigs

Additional file 1. Allele assignment (%) per chromosome (Chr) to synthetic boar (S), Landrace (LR), or Large White (LW) as breed-of-origin when using pedigree information and a relaxation factor of 20 %. The data provided represent the percentage of allele assignment to each purebred line as breed-of-origin per chromosome when using pedigree information and a relaxation factor of 20 %

MOESM1 of Assigning breed origin to alleles in crossbred animals

Additional file 1. Table S1: Percentages of alleles correctly assigned a breed origin (%correct), incorrectly assigned (%incorrect), or unassigned (%unknown) for a BC crossbred animal for the chromosome 1. Results are averages (SD) across the 10 replicates. Table S2: Percentages of alleles correctly assigned a breed origin (%correct), incorrectly assigned (%incorrect), or unassigned (%unknown) for a BC crossbred animal for the chromosome 2. Results are averages (SD) across the 10 replicates. Table S3: Percentages of alleles correctly assigned a breed origin (%correct), incorrectly assigned (%incorrect), or unassigned (%unknown) for a A(BC) crossbred animal for chromosome 1. Results are averages (SD) across the 10 replicates. Table S4: Percentages of alleles correctly assigned a breed origin (%correct), incorrectly assigned (%incorrect), or unassigned (%unknown) for a A(BC) crossbred animal for chromosome 2. Results are averages (SD) across the 10 replicates. Table S5: Percentages of BC and A(BC) animals having at least 80 % of assigned alleles, and Spearman rank correlations between the order of the phasing analyses obtained from the forward selection and a predefined order of the same phasing analyses for the A(BC) animals, with a relaxation factor equal to 10 %. Results are averages (SD) across the 10 replicates. Table S6: Percentages of assigned alleles of the chromosomes SSC2 and SSC18 for an EF or a D(EF) animal, and percentages of EF and D(EF) animals having at least 80 % of assigned alleles, with a relaxation factor equal to 10 %. Table S7: Average (SD) percentages of assigned alleles of the chromosomes SSC2 and SSC18 for an EF or a D(EF) animal. Table S8: Percentages of alleles correctly assigned a breed origin (%correct) and incorrectly assigned (%incorrect), for the chromosome 2 with 9 phasing analyses with, or without, the additional rules. Results are averages (SD) across the 10 replicates