Supplementary Table 2

Description of the different datasets concerning ovarian cancer transcriptomes (FF: fresh frozen, FFPE: formalin fixed paraffin embedded, TCGA: the cancer genome atlas)

PCD analysis R markdown

PCD analysis<br

List of authors

List of author

Supplementary methods

Supplementary method

Supplementary data 1

Normalized gene expression matrix of PCD samples (log2 transformed values).<br

Supplementary figure 4

Chromosomal location of differentially expressed genes between paraneoplastic samples and control samples

List of authors

List of the authors of the paper<br

Supplementary Table 4

Differentially expressed genes from PCD ovarian cancer analysis, with log fold change, p values and adjusted p values.<br

Supplementary Figure 5

Principal component analysis, median plotting and Pearson's correlation analysis before and after normalization.<br><b>A & B</b>: median of log2 PCD samples expression values to non PCD log2 expression values, before (<b>A</b>) and after (<b>B</b>) normalization. <b>C & D</b>: Pearson correlation heatmap between PCD an non PCD samples, before (<b>C</b>) and after (<b>D</b>) normalization. <b>E & F</b>: Principal component analysis of samples before (<b>E</b>) and after (<b>F</b>) normalization. <br

Supplementary Table 6

Correlation between Allen Brain Atlas and differentially expressed genes from comparative analysis between anti-Yo PCD OT samples and OT control samples (Wilcoxon's test).<br