Online object oriented Monte Carlo computational tool for the needs of biomedical optics

Conceptual engineering design and optimization of laser-based imaging techniques and optical diagnostic systems used in the field of biomedical optics requires a clear understanding of the light-tissue interaction and peculiarities of localization of the detected optical radiation within the medium. The description of photon migration within the turbid tissue-like media is based on the concept of radiative transfer that forms a basis of Monte Carlo (MC) modeling. An opportunity of direct simulation of influence of structural variations of biological tissues on the probing light makes MC a primary tool for biomedical optics and optical engineering. Due to the diversity of optical modalities utilizing different properties of light and mechanisms of light-tissue interactions a new MC code is typically required to be developed for the particular diagnostic application. In current paper introducing an object oriented concept of MC modeling and utilizing modern web applications we present the generalized online computational tool suitable for the major applications in biophotonics. The computation is supported by NVIDEA CUDA Graphics Processing Unit providing acceleration of modeling up to 340 times

Coherent effects in multiple scattering of linearly polarized light.

Comparing the stochastic Monte Carlo technique with the iteration procedure for solving the Bethe–Salpeter equation in the framework of numerical simulation, the time correlation function and the interference component of the coherent backscattering of a linearly polarized light wave in a multiply scattering medium are calculated. The results of the simulation agree well with theoretical results obtained by generalizing the Milne solution, as well as with experimental da

Amending of fluorescence sensor signal localization in human skin by matching of the reflective index.

Fluorescence diagnostic techniques are notable amongst many other optical methods because they offer high sensitivity and non-invasive measurement of tissue properties. However, a combination of multiple scattering and physical heterogeneity of biological tissue hampers interpretation of the fluorescence measurements. Analyses of the spatial distribution of endogenous and exogenous fluorophores excitation within tissues and their contribution to the detected signal localization are essential for many applications. We have developed a novel Monte Carlo technique that gives a graphical perception of how the excitation and fluorescence detected signal are localized in tissues. Our model takes into account the spatial distribution of fluorophores, the variation of concentrations and quantum yield. We demonstrate that matching the refractive indices of the ambient medium and topical skin layer improves spatial localization of the detected fluorescence signal within the tissues

Influence of refractive index matching on the photon diffuse reflectance

Photon migration in a randomly inhomogeneous, highly scattering and absorbing semi-infinitemediumwith a plane boundary is considered by aMonte Carlo (MC) technique. The employed MC technique combines the statistical weight scheme and real photon paths simulation, allowing the exclusion of the energy conservation problem. The internal reflection of the scattered radiation on the medium interface is taken into account by allowing the trajectories of photon packets to be split into reflected and transmitted parts. The spatial photon sensitivity profile (SPSP), spatially resolved diffuse reflectance and angular and spatial photon detectorweight distributions are considered in terms of Fresnel’s reflection/refraction on the boundary of the medium. The effect of the refractive index match is predicted correctly by the MC method and by the diffusion approximation. The results demonstrate that matching of the refractive index of the medium significantly improves the contrast and spatial resolution of the spatial photon sensitivity profile (SPSP). The results of simulation of the spatially resolved diffuse reflectance agree well with the results predicted by the diffusion approximation and the experimental results reported earli

Low and high orders light scattering within the dispersible media.

Sprays, aerosols as well as other industrially relevant turbid media can be characterized by light scattering techniques. However these techniques often fall into the intermediate scattering regime where the average number of times a photon is scattered is too great for single scattering to be assumed, but too few for the diffusion approximation to be applied. We present the results of theoretical study provided details of scattering of laser radiation in the intermediate single-tomultiple scattering regime. Crossed fiber optic source- detector geometry is considered to separate the intensity of single scattering from higher scattering orders. A quantitative analysis of scattering orders in the intermediate single-tomultiple scattering regime is presented. Agreement between the analytical and Monte Carlo techniques both used for the calculation of double light scattering intensity is demonstrated. Influence of detector numerical aperture on the scattering orders is shown for the intermediate single-to-multiple scattering regime. The method used can be applied to verify analytical results indirectly against experiment via Monte Carlo calculations that include the imperfections of the experiment

Crossed source-detector geometry for a novel spray diagnostic: Monte Carlo simulation and analytical results

Sprays and other industrially relevant turbid media can be quantitatively characterized by light scattering. However, current optical diagnostic techniques generate errors in the intermediate scattering regime where the average number of light scattering is too great for the single scattering to be assumed, but too few for the diffusion approximation to be applied. Within this transitional single-to-multiple scattering regime, we consider a novel crossed source-detector geometry that allows the intensity of single scattering to be measured separately from the higher scattering orders. We verify Monte Carlo calculations that include the imperfections of the experiment against analytical results. We show quantitatively the influence of the detector numerical aperture and the angle between the source and the detector on the relative intensity of the scattering orders in the intermediate single-to-multiple scattering regime. Monte Carlo and analytical calculations of double light-scattering intensity are made with small particles that exhibit isotropic scattering. The agreement between Monte Carlo and analytical techniques validates use of the Monte Carlo approach in the intermediate scattering regime. Monte Carlo calculations are then performed for typical parameters of sprays and aerosols with anisotropic (Mie) scattering in the intermediate single-to-multiple scattering regime

Study of the possibility of increasing the probing depth by the method of reflection confocal microscopy upon immersion clearing of near-surface human skin layers.

The possibility of increasing the human-skin probing depth by the method of reflection confocal microscopy (RCM) upon decreasing the amplitude of spatial fluctuations of the refractive index of the upper skin layers is considered. A change in the probing depth is estimated by analysing the spatial distribution of the probability density of the effective optical paths of detected photons calculated by the Monte Carlo method. The results of the numerical simulation are interpreted within the framework of the possible application of RCM to the study of the human skin exposed to an immersion liquid compatible to it. A diffusion of the immersion agent into the skin depth involves the equalising of the refractive indices of the structural elements of near-surface skin layers, which in turn causes a decrease in the scattering intensity and a certain increase in the transparency of the upper tissue layers. It is shown that a decrease in the light scattering in the near-surface skin layers leads to a significant increase in the probing depth obtained with the RCM technique