Additional file 1: of Stepwise approach to SNP-set analysis illustrated with the Metabochip and colorectal cancer in Japanese Americans of the Multiethnic Cohort

Detailed characterization of genes and pathways used in the analysis. Supplementary Material. Detailed characterization of genes and SNPs used in the analysis. (DOCX 51 kb

Additional file 2: Table S1. of Sex and ethnic/racial-specific risk factors for gallbladder disease

Distribution of Risk Factors among MEC participants by sex and race/ethnicity. This table shows the distribution of risk factors in the MEC by sex and race/ethnicity. (DOCX 16 kb

Additional file 9: Figure S5. of Deep targeted sequencing of 12 breast cancer susceptibility regions in 4611 women across four different ethnicities

MAF distribution for SNVs in the 1000 Genomes Project but not in this study. (DOCX 49 kb

Additional file 2: of A survey of microRNA single nucleotide polymorphisms identifies novel breast cancer susceptibility loci in a case-control, population-based study of African-American women

Figure S1. BAIAP2 gene expression (from Gene-Tissue Expression project, GTEx) in human tissues [46]. (DOCX 193 kb

Additional file 1: of A survey of microRNA single nucleotide polymorphisms identifies novel breast cancer susceptibility loci in a case-control, population-based study of African-American women

Table S1. Association of the top seven miRNA SNPs from the full analyses with p < 5 × 10−6 in case versus control and case-only subtype analyses. (XLSX 72 kb

Theorizing Ontology

University of California Santa Cruz (UCSC) Genome browser view (chr6:22308200–22348900) showing the position of single nucleotide polymorphisms (SNPs) rs9356811, rs10946546, rs9358531, rs9393273, rs12525289, rs12199382 and rs12524161. (DOC 261 kb

Additional file 10: Figure S2. of A comprehensive evaluation of interaction between genetic variants and use of menopausal hormone therapy on mammographic density

University of California Santa Cruz (UCSC) Genome browser view (chr6:22308200–22348900) showing the position of single nucleotide polymorphisms (SNPs) rs9356811, rs10946546, rs9358531, rs9393273, rs12525289, rs12199382 and rs12524161. (DOC 261 kb

Six-way Venn diagram showing polymorphic putative functional variants shared by reported ethnicities.

<p>Numbers of shared variants are shown at intersections. The total numbers of polymorphic variants by ethnicity are listed in the upper-left hand corner.</p

Cases and Controls by Reported Ethnicity and Study.

<p>Cases and Controls by Reported Ethnicity and Study.</p

Manhattan plots for the endometrial cancer association analysis.

<p>Results of single variant analyses (−log₁₀p) are plotted against chromosome position (NCBI build 37) for association over all ethnicities (A) and for associations within Caucasians (B). Suggestive variants are labeled above. Results were adjusted for age at diagnosis, BMI, study site, plate, and the first four principal components.</p