Virus self-assembly proceeds through contact-rich energy minima

Self-assembly of supramolecular complexes such as viral capsids occurs prominently in nature. Nonetheless, the mechanisms underlying these processes remain poorly understood. Here, we uncover the assembly pathway of hepatitis B virus (HBV), applying fluorescence optical tweezers and high-speed atomic force microscopy. This allows tracking the assembly process in real time with single-molecule resolution. Our results identify a specific, contact-rich pentameric arrangement of HBV capsid proteins as a key on-path assembly intermediate and reveal the energy balance of the self-assembly process. Real-time nucleic acid packaging experiments show that a free energy change of ~1.4 k(B)T per condensed nucleotide is used to drive protein oligomerization. The finding that HBV assembly occurs via contact-rich energy minima has implications for our understanding of the assembly of HBV and other viruses and also for the development of new antiviral strategies and the rational design of self-assembling nanomaterials

Duplex DNA and BLM regulate gate opening by the human TopoIIIα-RMI1-RMI2 complex

Topoisomerase IIIα is a type 1A topoisomerase that forms a complex with RMI1 and RMI2 called TRR in human cells. TRR plays an essential role in resolving DNA replication and recombination intermediates, often alongside the helicase BLM. While the TRR catalytic cycle is known to involve a protein-mediated single-stranded (ss)DNA gate, the detailed mechanism is not fully understood. Here, we probe the catalytic steps of TRR using optical tweezers and fluorescence microscopy. We demonstrate that TRR forms an open gate in ssDNA of 8.5 ± 3.8 nm, and directly visualize binding of a second ssDNA or double-stranded (ds)DNA molecule to the open TRR-ssDNA gate, followed by catenation in each case. Strikingly, dsDNA binding increases the gate size (by ~16%), while BLM alters the mechanical flexibility of the gate. These findings reveal an unexpected plasticity of the TRR-ssDNA gate size and suggest that TRR-mediated transfer of dsDNA may be more relevant in vivo than previously believed

Improved photostability in ternary blend organic solar cells:The role of [70]PCBM

Polymer solar cells are potentially key contributors to the next-generation organic photovoltaics for sustainable green sources of energy. In the past few years, ternary organic solar cells have emerged with promising characteristics. They have proven to yield high efficiency at about 15% for single junction donor:acceptor (D:A) solar cells. However, the low stability of organic solar cells is a hindrance to the commercialisation of this technology, and thus, needs more attention. Here, we show that with the right ratio of D : A1 : A2, ternary blend solar cells can be more efficient and more photostable than their D:A binary blend solar cells. We add [70]PCBM to PBDB-T:ITIC and PTB7-Th:ITIC binary blend solar cells in various ratios to fabricate ternary solar cells. The ternary solar cells outperform all binary cells in terms of efficiency and photostability with only a 10% average loss in efficiency under continuous illumination irrespective of the device structure. We identify changes in the molecular structure of the active layer blends as the main reason behind the observed degradation behaviour of the solar cells. The ternary blends are the most resilient to photo-induced molecular structural changes. This finding suggests that ternary organic solar cells could be a way to achieve photostable devices

Photostability of Fullerene and Non-Fullerene Polymer Solar Cells:The Role of the Acceptor

Recently, the advent of non-fullerene acceptors (NFAs) made it possible for organic solar cells (OSCs) to break the 10% efficiency barrier hardly attained by fullerene acceptors (FAs). In the past five years alone, more than hundreds of NFAs with applications in organic photovoltaics (OPVs) have been synthesized, enabling a notable current record efficiency of above 15%. Hence, there is a shift in interest towards the use of NFAs in OPVs. However, there has been little work on the stability of these new materials in devices. More importantly, there is very little comparative work on the photo-stability of FAs vs. NFAs solar cells, to ascertain the pros and cons of the two systems. Here, we show the photo-stability of solar cells based on two workhorse acceptors, in both conventional and inverted structures, namely ITIC (as NFA) and [70]PCBM (as FA) blended with either PBDB-T or PTB7-Th polymer. We found that irrespective of the polymer, the cell structure, or the initial efficiency, the [70]PCBM devices are more photo-stable than the ITIC ones. This observation, however, opposes the assumption that NFA solar cells are more photo-chemically stable. These findings suggest that complementary absorption should not take precedence in the design rules for the synthesis of new molecules and there is still work left to be done to achieve stable as well as efficient OSCs

Duplex DNA and BLM regulate gate opening by the human TopoIIIα-RMI1-RMI2 complex

Topoisomerase IIIα is a type 1A topoisomerase that forms a complex with RMI1 and RMI2 called TRR in human cells. TRR plays an essential role in resolving DNA replication and recombination intermediates, often alongside the helicase BLM. While the TRR catalytic cycle is known to involve a protein-mediated single-stranded (ss)DNA gate, the detailed mechanism is not fully understood. Here, we probe the catalytic steps of TRR using optical tweezers and fluorescence microscopy. We demonstrate that TRR forms an open gate in ssDNA of 8.5 ± 3.8 nm, and directly visualize binding of a second ssDNA or double-stranded (ds)DNA molecule to the open TRR-ssDNA gate, followed by catenation in each case. Strikingly, dsDNA binding increases the gate size (by ~16%), while BLM alters the mechanical flexibility of the gate. These findings reveal an unexpected plasticity of the TRR-ssDNA gate size and suggest that TRR-mediated transfer of dsDNA may be more relevant in vivo than previously believed