Runtime comparisons on different filesystems.

<p>Runtime comparisons of fetchGWI when the index file is stored either on a filesystem on local disks, or on a SFS cluster filesystem. Each point is computed from the average of three runs with different input data, except the last run done on the whole dataset. Only perfect matches were sought.</p

Runtime comparisons on the human genome.

<p>Runtime comparisons between fetchGWI using plain and compressed index files, tagger, and megablast. Each point is computed from the average of three runs on the human genome with different input data, except the last run done on the whole dataset. Only perfect matches are sought, except for the 2 experiments explicitly noted were 2 mismatches were allowed.</p

Word duplication in several genomes.

<p>Analysis of the percentage of unique sequence tags in several genomes as a function of tag length.</p

Runtime comparisons on combined index files.

<p>Runtime comparisons of fetchGWI when using either multiple index files, or a single, combined, index file. Each point is computed from the average of three runs on the human and mouse genomes with different input data, except the last run done on the whole dataset Only perfect matches were sought.</p

Runtime comparisons on multiple genomes.

<p>Runtime comparisons between fetchGWI (using a compressed index file) and megablast. Each point is computed from the average of three runs on the combined genome of 9 species (human, mouse, honey bee, cattle, dog, drosophila, zebrafish, chimp, and rat) with different input data, except the last run done on the whole dataset. Only perfect matches were sought.</p

Proportion of different genomic elements in the captured samples with and without COT-I DNA as compared to their relative abundance in the human genome.

<p>Reads were mapped to the reference human genome using BLAT, allowing 2 mismatches and 1 indel with a minimal perfect match of 30 bp.</p

Distribution of percentages of a minor variant for SNPs as recovered by Illumina sequencing.

<p>Red: homozygous SNPs, blue: heterozygous SNPs. Solid line: HapMap SNPs, dashed line: new SNPs.</p

SNPs in the coding sequences of the genes from the target region.

<p>SNPs in the coding sequences of the genes from the target region.</p

Number of sequence reads extracted from intensity files using Illumina and Rolexa analysis.

<p>Number of sequence reads extracted from intensity files using Illumina and Rolexa analysis.</p

Numbers of homozygous and heterozygous SNPs identified in NA12782 at different sequence coverage thresholds.

<p>Numbers of homozygous and heterozygous SNPs identified in NA12782 at different sequence coverage thresholds.</p