68 research outputs found
Electrochemical Catalysis of Inorganic Complex K<sub>4</sub>[Fe(CN)<sub>6</sub>] by Shewanellaoneidensis MR-1
Extracellular polymeric substances play roles in extracellular electron transfer of Shewanella oneidensis MR-1
Electrocatalytic oxidation of K<sub>4</sub>[Fe(CN)<sub>6</sub>] by metal-reducing bacteriumShewanella oneidensis MR-1
Stabilization of Tryptophan Hydroxylase 2 by L-Phenylalanine Induced Dimerization
Tryptophan hydroxylase 2 (TPH2) catalyses the initial and rateâlimiting step in the biosynthesis of serotonin, which is associated with a variety of disorders such as depression, obsessive compulsive disorder, and schizophrenia. Fullâlength TPH2 is poorly characterized due to low purification quantities caused by its inherent instability. Three truncated variants of human TPH2 (rch TPH2; regulatory and catalytic domain, NÎ47ârch TPH2; truncation of 47 residues in the N terminus of rch TPH2, and ch TPH2; catalytic domain) were expressed, purified, and examined for changes in transition temperature, inactivation rate, and oligomeric state. ch TPH2 displayed 14â and 11âfold higher halfâlives compared to rch TPH2 and NÎ47ârch TPH2, respectively. Differential scanning calorimetry experiments demonstrated that this is caused by premature unfolding of the less stable regulatory domain. By differential scanning fluorimetry, the unfolding transitions of rch TPH2 and NÎ47ârch TPH2 are found to shift from polyphasic to apparent twoâstate by the addition of lâTrp or lâPhe. Analytical gel filtration revealed that rch TPH2 and NÎ47ârch TPH2 reside in a monomerâdimer equilibrium which is significantly shifted toward dimer in the presence of lâPhe. The dimerizing effect induced by lâPhe is accompanied by a stabilizing effect, which resulted in a threefold increase in halfâlives of rch TPH2 and NÎ47ârch TPH2. Addition of lâPhe to the purification buffer significantly increases the purification yields, which will facilitate characterization of hTPH2
Electrocatalytic oxidation of K4[Fe(CN)6] by metal-reducing bacterium Shewanella oneidensis MR-1
Extracellular polymeric substances are transient media for microbial extracellular electron transfer
Extracellular polymeric substances play important roles in microbial extracellular electron transfer processes.</jats:p
Electrochemical Catalysis of Inorganic Complex K<sub>4</sub>[Fe(CN)<sub>6</sub>] by <i>Shewanella oneidensis</i> MR -1
Isoform-Specific Substrate Inhibition Mechanism of Human Tryptophan Hydroxylase
Tryptophan hydroxylase
(TPH) catalyzes the initial and rate-limiting
step in the biosynthesis of serotonin, which is associated with a
variety of disorders such as depression and irritable bowel syndrome.
TPH exists in two isoforms: TPH1 and TPH2. TPH1 catalyzes the initial
step in the synthesis of serotonin in the peripheral tissues, while
TPH2 catalyzes this step in the brain. In this study, the steady-state
kinetic mechanism for the catalytic domain of human TPH1 has been
determined. Varying substrate tryptophan (Trp) and tetrahydrobiopterin
(BH<sub>4</sub>) results in a hybrid Ping Pong-ordered mechanism in
which the reaction can either occur through a Ping Pong or a sequential
mechanism depending on the concentration of tryptophan. The catalytic
domain of TPH1 shares a sequence identity of 81% with TPH2. Despite
the high sequence identity, differences in the kinetic parameters
of the isoforms have been identified; i.e., only TPH1 displays substrate
tryptophan inhibition. This study demonstrates that the difference
can be traced to an active site loop which displays different properties
in the TPH isoforms. Steady-state kinetic results of the isoforms,
and variants with point mutations in a loop lining the active site,
show that the kinetic parameters of only TPH1 are significantly changed
upon mutations. Mutations in the active site loop of TPH1 result in
an increase in the substrate inhibition constant, <i>K</i><sub><i>i</i></sub>, and therefore turnover rate. Molecular
dynamics simulations reveal that this substrate inhibition mechanism
occurs through a closure of the cosubstrate, BH<sub>4</sub>, binding
pocket, which is induced by Trp binding
A new insight into the zinc-dependent DNA-cleavage by the colicin E7 nuclease:a crystallographic and computational study
The crystal structure of a colicin E7 metallonuclease mutant complemented by QM/MM calculations suggests an alternative catalytic mechanism of Zn2+-containing HNH nucleases.</p
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