45 research outputs found
Apicophilicity versus Hydrogen Bonding. Intramolecular Coordination and Hydrogen Bonds in <i>N</i>‑[(Hydroxydimethylsilyl)methyl]-<i><i>N,N</i></i>′‑propyleneurea and Its Hydrochloride. DFT and FT-IR Study and QTAIM and NBO Analysis
Conformers
of <i>N</i>-[(hydroxydimethylsilyl)Âmethyl]-<i><i>N,N</i></i>′-propyleneurea (<b>1</b>) and
their hydrochlorides (<b>2</b>) with HCl coordinated
to different basic sites have been studied experimentally by FT-IR
and theoretically using the density functional theory (DFT) method
at the B3LYP/6-311+GÂ(d,p) and M06/6-311+GÂ(d,p) levels of theory. The
structures of silanols <b>1</b> and <b>2</b> are determined
by the balance of two competing effects: namely, intramolecular CO→Si
coordination and intramolecular CO···H–O
or intermolecular X···H–Cl hydrogen bonding.
The preferred conformation of silanol <b>1</b> is that with
an equatorial hydroxyl group, in apparent contradiction with the apicophilicity
rule. In the crystal, silanol <b>1</b> exists as a conformer
with a bifurcated bond composed of a weak CO→Si coordinated
bond and a substantially more strong CO···H–O
hydrogen bond. From the NBO analysis, the energies of the n<sub>O</sub> → σ*<sub>Si–X</sub> and n<sub>O</sub> →
σ*<sub>H–O</sub> orbital interactions responsible for
the formation of the coordination and hydrogen bonds, as well as the
lengths of these bonds, change in opposite directions. In solution
the equilibrium is shifted toward the conformer having only the hydrogen
bond and no coordination bond. Its hydrochloride <b>2</b> exists
in the crystal as a conformer with the axial OH group coordinated
to HCl, whereas in solution it appears to be in equilibrium with a
conformer having the equatorial OH group, in which a four-centered
bifurcated bond is formed by two intramolecular components CO→Si
and CO···HO and one intermolecular component
CO···HCl. The QTAIM analysis showed the O→Si
coordination bonds in the studied compounds to fall in the range from
partially covalent and weak donor–acceptor to mainly electrostatic
in nature and the hydrogen bonds to vary from weak to medium in energy