Improving Patch-Based Convolutional Neural Networks for MRI Brain Tumor Segmentation by Leveraging Location Information.

The manual brain tumor annotation process is time consuming and resource consuming, therefore, an automated and accurate brain tumor segmentation tool is greatly in demand. In this paper, we introduce a novel method to integrate location information with the state-of-the-art patch-based neural networks for brain tumor segmentation. This is motivated by the observation that lesions are not uniformly distributed across different brain parcellation regions and that a locality-sensitive segmentation is likely to obtain better segmentation accuracy. Toward this, we use an existing brain parcellation atlas in the Montreal Neurological Institute (MNI) space and map this atlas to the individual subject data. This mapped atlas in the subject data space is integrated with structural Magnetic Resonance (MR) imaging data, and patch-based neural networks, including 3D U-Net and DeepMedic, are trained to classify the different brain lesions. Multiple state-of-the-art neural networks are trained and integrated with XGBoost fusion in the proposed two-level ensemble method. The first level reduces the uncertainty of the same type of models with different seed initializations, and the second level leverages the advantages of different types of neural network models. The proposed location information fusion method improves the segmentation performance of state-of-the-art networks including 3D U-Net and DeepMedic. Our proposed ensemble also achieves better segmentation performance compared to the state-of-the-art networks in BraTS 2017 and rivals state-of-the-art networks in BraTS 2018. Detailed results are provided on the public multimodal brain tumor segmentation (BraTS) benchmarks

A Research and Strategy of Remote Sensing Image Denoising Algorithms

Most raw data download from satellites are useless, resulting in transmission waste, one solution is to process data directly on satellites, then only transmit the processed results to the ground. Image processing is the main data processing on satellites, in this paper, we focus on image denoising which is the basic image processing. There are many high-performance denoising approaches at present, however, most of them rely on advanced computing resources or rich images on the ground. Considering the limited computing resources of satellites and the characteristics of remote sensing images, we do some research on these high-performance ground image denoising approaches and compare them in simulation experiments to analyze whether they are suitable for satellites. According to the analysis results, we propose two feasible image denoising strategies for satellites based on satellite TianZhi-1.Comment: 9 pages, 4 figures, ICNC-FSKD 201

A note on Makeev's conjectures

A counterexample is given for the Knaster-like conjecture of Makeev for functions on $S^2$. Some particular cases of another conjecture of Makeev, on inscribing a quadrangle into a smooth simple closed curve, are solved positively

A P2X receptor-mediated nociceptive afferent pathway to lamina I of the spinal cord

Of the six lamina regions in the dorsal horn of the spinal cord, lamina I is a major sensory region involved in nociceptive transmission under both physiological and pathological conditions. While P2X receptors have been shown to be involved in nociception, it remains unknown if P2X receptors are involved in nociceptive transmission to lamina I neurons. Using rat spinal cord slice preparations and patch-clamp recordings, we have demonstrated that the excitatory synaptic transmission between primary afferent fibers and lamina I neurons is significantly affected by ATP and α,β-methylene-ATP. The synaptic effects of them include the increases of the frequency of both miniature excitatory postsynaptic currents (mEPSCs) and spontaneous EPSCs (sEPSCs), and decreases of evoked EPSCs (eEPSCs). These effects were blocked by pyridoxalphosphate-6-azophenyl-2', 4'-disulfonic acid (PPADS, 10 μM) and suramin (30 μM). In the neurons for which ATP and α,β-methylene-ATP had effects on mEPSCs, sEPSCs and eEPSCs, capsaicin produced similar synaptic effects. Our results indicate that P2X receptors are expressed on many afferent fibers that directly synapse to lamina I neurons. Furthermore, these P2X receptor-expressing afferent fibers are capsaicin-sensitive nociceptive afferents. Thus, this study reveals a P2X receptor-mediated nociceptive afferent pathway to lamina I of the spinal cord and provides a new insight into the nociceptive functions of P2X receptors

Experimental data of bio self-healing concrete incubated in saturated natural soil

he provision of suitable incubation environments is vital for successful implementation of bio self-healing concrete (bio-concrete). We investigated the effect of soil incubation to examine if the self-healing process can be activated in comparison with the conventional incubation environment (water). The data was collected from laboratory-scale experiments conducted on mortar specimens. The mortar was impregnated with Bacillus subtilis and this bacteria was encapsulated in calcium alginate for protection from the production process. The mortar specimens were mechanically cracked and then incubated within fine-grained fully saturated natural soil for about 4 weeks. The cracks were inspected before and after incubation by light microscopy to evaluate the healing ratio. The mineral precipitations on crack surfaces were examined by Scanning Electron Microscope (SEM) and Energy Dispersive X-Ray Spectrometry (EDX). The data reflects the efficiency of bio-concrete for certain structures such as tunnels and deep foundation, where concrete elements are exposed to ground conditions.This research is funded by European Union's Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement No 798021 (GEOBACTICON). The research has also received funding from PGTA scholarship awarded by the University of Derby (E&T-15-PGTA-0717)

Precipitation chemistry of Lhasa and other remote towns, Tibet

Precipitation event samples during 1987-1988 field expedition periods and 1997, 1998, 1999 and 2000 have been collected at Lhasa, Dingri, Dangxiong and Amdo, Tibet. The sampling and analysis were based on WMO recommendations for a background network with some modifications according to local conditions and environmental characteristics. The following precipitation constituents and related parameters were measured: pH, conductivity, CO2 partial pressure, total suspended particles, and the content of K+, Na+, Ca2+, Mg2+, Fe, Mn, NH4 +, Cl-, NO2 -, NO3 -, SO4 2-Br-, HCO3 - and HPO4 2-. Some atmospheric dust samples have also been collected. Over 300 precipitation events have been measured for pH and conductivity. Among these, 60 have been analysed for their chemical components. The results show that Lhasa's precipitation events were constantly alkaline with weighted averages of pH 8.36 in the 1987-1988 period, and 7.5 for 1997 to 1999. Only one event was weakly acidic during 1997-1999. Although CO2 partial pressure, a major producer of acidity in natural water on the Plateau, falls with increasing elevation, the lowest measured CO2 partial pressure can only raise pH value by 0.1 units in the sampling areas. Chemical analysis indicates that the major contributor to alkaline precipitation is the continental dust, which is rich in calcium. The analysis also shows that Tibet is still one of the cleanest areas in the world with little air pollution. However, the decline of pH from the 1980s to 1990s, which was reflected by an increase of NO3 - and SO4 2- in precipitation, alerts us to the urgency of environmental protection in this fragile paradise. © 2002 Elsevier Science Ltd. All rights reserved.postprin

Mitochondria and the eye—manifestations of mitochondrial diseases and their management

Historically, distinct mitochondrial syndromes were recognised clinically by their ocular features. Due to their predilection for metabolically active tissue, mitochondrial diseases frequently involve the eye, resulting in a range of ophthalmic manifestations including progressive external ophthalmoplegia, retinopathy and optic neuropathy, as well as deficiencies of the retrochiasmal visual pathway. With the wider availability of genetic testing in clinical practice, it is now recognised that genotype-phenotype correlations in mitochondrial diseases can be imprecise: many classic syndromes can be associated with multiple genes and genetic variants, and the same genetic variant can have multiple clinical presentations, including subclinical ophthalmic manifestations in individuals who are otherwise asymptomatic. Previously considered rare diseases with no effective treatments, considerable progress has been made in our understanding of mitochondrial diseases with new therapies emerging, in particular, gene therapy for inherited optic neuropathies

Establishment of a doxycycline-regulated cell line with inducible, doubly-stable expression of the wild-type p53 gene from p53-deleted hepatocellular carcinoma cells

p53 is important in the development of hepatocellular carcinoma (HCC) and in therapeutic approaches, but the mechanism whereby it inhibits HCC growth is still unclear. The aim of the present study was to establish a HCC cell system in which p53 levels can be regulated. Full-length wild-type p53 cDNA obtained by PCR was cloned into a retroviral response vector controlled by the tetracycline responsive element (RevTRE-p53). The regulatory vectors RevTet-Off and RevTRE-p53 were transfected into a packaging cell line, PT67. Hep3B cells in which the p53 gene was deleted were infected with RevTet-Off viral particles from the PT67. Three G418-resistant cell clones with high luciferase expression and low background were infected with RevTRE-p53. By screening dozens of RevTRE-p53-infected clones with hygromycin we identified the one with the highest expression of p53 and the lowest background after doxycycline treatment. The results showed that p53 expression in this cell clone could be simply turned on or off by removing or adding doxycycline. Furthermore, it was found that the level of p53 protein was negatively and sensitively related to the doxycycline concentration. In conclusion, we have established a HCC cell line in which p53 expression can be switched on or off and regulated in a dose- and time-dependent manner

Cordycepin enhances cisplatin apoptotic effect through caspase/MAPK pathways in human head and neck tumor cells

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