Improving Medical Dialogue Generation with Abstract Meaning Representations

Medical Dialogue Generation serves a critical role in telemedicine by facilitating the dissemination of medical expertise to patients. Existing studies focus on incorporating textual representations, which have limited their ability to represent the semantics of text, such as ignoring important medical entities. To enhance the model's understanding of the textual semantics and the medical knowledge including entities and relations, we introduce the use of Abstract Meaning Representations (AMR) to construct graphical representations that delineate the roles of language constituents and medical entities within the dialogues. In this paper, We propose a novel framework that models dialogues between patients and healthcare professionals using AMR graphs, where the neural networks incorporate textual and graphical knowledge with a dual attention mechanism. Experimental results show that our framework outperforms strong baseline models in medical dialogue generation, demonstrating the effectiveness of AMR graphs in enhancing the representations of medical knowledge and logical relationships. Furthermore, to support future research in this domain, we provide the corresponding source code at https://github.com/Bernard-Yang/MedDiaAMR

Improving Medical Dialogue Generation with Abstract Meaning Representations

Medical Dialogue Generation serves a critical role in telemedicine by facilitating the dissemination of medical expertise to patients. Existing studies focus on incorporating textual representations, which have limited their ability to represent the semantics of text, such as ignoring important medical entities. To enhance the model's understanding of the textual semantics and the medical knowledge including entities and relations, we introduce the use of Abstract Meaning Representations (AMR) to construct graphical representations that delineate the roles of language constituents and medical entities within the dialogues. In this paper, We propose a novel framework that models dialogues between patients and healthcare professionals using AMR graphs, where the neural networks incorporate textual and graphical knowledge with a dual attention mechanism. Experimental results show that our framework outperforms strong baseline models in medical dialogue generation, demonstrating the effectiveness of AMR graphs in enhancing the representations of medical knowledge and logical relationships. Furthermore, to support future research in this domain, we provide the corresponding source code at https://github.com/Bernard-Yang/MedDiaAMR.Comment: Submitted to ICASSP 202

Effective Distillation of Table-based Reasoning Ability from LLMs

Large Language Models (LLMs) have demonstrated remarkable performance across a wide range of natural language processing tasks. However, their remarkable parameter size and their impressive high requirement of computing resources pose challenges for their practical deployment. Recent research has revealed that specific capabilities of LLMs, such as numerical reasoning, can be transferred to smaller models through distillation. Some studies explore the potential of leveraging LLMs to perform table-based reasoning. Nevertheless, prior to our work, there has been no investigation into the prospect of specialising table reasoning skills in smaller models specifically tailored for table-to-text generation tasks. In this paper, we propose a novel table-based reasoning distillation, with the aim of distilling distilling LLMs into tailored, smaller models specifically designed for table-based reasoning task. Experimental results have shown that a 0.22 billion parameter model (Flan-T5-base) fine-tuned using distilled data, not only achieves a significant improvement compared to traditionally fine-tuned baselines but also surpasses specific LLMs like gpt-3.5-turbo on the scientific table-to-text generation dataset (SciGen). The code and data are released in https://github.com/Bernard-Yang/TableDistill

Identification and profiling of microRNA between back and belly Skin in Rex rabbits (Oryctolagus cuniculus)

[EN] Skin is an important trait for Rex rabbits and skin development is influenced by many processes, including hair follicle cycling, keratinocyte differentiation and formation of coat colour and skin morphogenesis. We identified differentially expressed microRNAs (miRNAs) between the back and belly skin in Rex rabbits. In total, 211 miRNAs (90 upregulated miRNAs and 121 downregulated miRNAs) were identified with a |log2 (fold change)|>1 and P-value<0.05. Using target gene prediction for the miRNAs, differentially expressed predicted target genes were identified and the functional enrichment and signalling pathways of these target genes were processed to reveal their biological functions. A number of differentially expressed miRNAs were found to be involved in regulation of the cell cycle, skin epithelium differentiation, keratinocyte proliferation, hair follicle development and melanogenesis. In addition, target genes regulated by miRNAs play key roles in the activities of the Hedgehog signalling pathway, Wnt signalling pathway, Osteoclast differentiation and MAPK pathway, revealing mechanisms of skin development. Nine candidate miRNAs and 5 predicted target genes were selected for verification of their expression by quantitative reverse transcription polymerase chain reaction. A regulation network of miRNA and their target genes was constructed by analysing the GO enrichment and signalling pathways. Further studies should be carried out to validate the regulatory relationships between candidate miRNAs and their target genes.This study was supported by the Modern Agricultural Industrial System Special Funding (CARS-44-A-1), the Priority Academic Programme Development of Jiangsu Higher Education Institutions (2014-134) and the General Programme of Natural Science Foundation of the Higher Education Institutions of Jiangsu Province (16KJB230001).Zhao, B.; Chen, Y.; Mu, L.; Hu, S.; Wu, X. (2018). Identification and profiling of microRNA between back and belly Skin in Rex rabbits (Oryctolagus cuniculus). World Rabbit Science. 26(2):179-190. https://doi.org/10.4995/wrs.2018.7058SWORD179190262Adamidi C. 2008. Discovering microRNAs from deep sequencing data using miRDeep. Nature Biotechnol., 26: 407-415. https://doi.org/10.1038/nbt1394Adijanto J., Castorino J.J., Wang Z.X., Maminishkis A., Grunwald G.B., Philp N.J. 2012. 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Effective Distillation of Table-based Reasoning Ability from LLMs

Large Language Models (LLMs) have demonstrated remarkable performance across a wide range of natural language processing tasks. However, their enormous parameter size and extremely high requirements for compute power pose challenges for their practical deployment. Recent research has revealed that specific capabilities of LLMs, such as numerical reasoning, can be transferred to smaller models through distillation. Some studies explore the potential of leveraging LLMs to perform table-based reasoning. However, there has been no prior work focusing on table reasoning skills in smaller models specifically tailored for scientific table-to-text generation tasks. In this paper, we propose a novel table-based reasoning distillation approach, with the aim of distilling LLMs into tailored smaller models. Our experimental results have shown that a 220 million parameter model (Flan-T5-base) fine-tuned using distilled data, not only achieves a significant improvement compared to traditionally fine-tuned baselines, but also surpasses specific LLMs on a scientific table-to-text generation dataset. Our code is available at https://github.com/Bernard-Yang/DistillTableCoT

Effective Room-Temperature Ammonia-Sensitive Composite Sensor Based on Graphene Nanoplates and PANI

The graphene nanoplate (GN)-polyaniline (PANI) composite was developed via in-situ polymerization method and simultaneously assembled on interdigital electrodes (IDEs) at low temperature for ammonia (NH3) detection. The assembled composite sensor showed excellent sensing performance toward different concentrations of NH3, 1.5 of response value and 123 s/204 s for the response/recovery time to 15 ppm NH3. Meanwhile, an interesting supersaturation phenomenon was observed at high concentration of NH3. A reasonable speculation was proposed for this special sensing behavior and the mechanism for enhanced sensing properties was also analyzed

Characterisation and functional analysis of the WIF1 gene and its role in hair follicle growth and development of the Angora rabbit

[EN] Growth and development of hair follicles (HF) is a complex and dynamic process in most mammals. As HF growth and development regulate rabbit wool yield, exploring the role of genes involved in HF growth and development may be relevant. In this study, the coding sequence of the Angora rabbit (Oryctolagus cuniculus) WIF1 gene was cloned. The length of the coding region sequence was found to be 1140 bp, which encodes 379 amino acids. Bioinformatics analysis indicated that the WIF1 protein was unstable, hydrophilic and located in the extracellular region, contained a putative signal peptide and exhibited a high homology in different mammals. Moreover, WIF1 was significantly downregulated in the high wool production in the Angora rabbit group. Overexpression and knockdown studies revealed that WIF1 regulates HF growth and development-related genes and proteins, such as LEF1 and CCND1. WIF1 activated β-catenin/TCF transcriptional activity, promoted cell apoptosis and inhibited cellular proliferation. These results indicate that WIF1 might be important for HF development. This study, therefore, provides a theoretical foundation for investigating WIF1 in HF growth and development.This research was funded by This research was funded by National Natural Science Foundation of China (Grant No. 32102529), China Agriculture Research System of MOF and MARA (CARS-43-A-1).Zhao, B.; Li, J.; Zhang, X.; Bao, Z.; Chen, Y.; Wu, X. (2022). Characterisation and functional analysis of the WIF1 gene and its role in hair follicle growth and development of the Angora rabbit. World Rabbit Science. 30(3):209-218. https://doi.org/10.4995/wrs.2022.1735320921830

SIGformer: Sign-aware Graph Transformer for Recommendation

In recommender systems, most graph-based methods focus on positive user feedback, while overlooking the valuable negative feedback. Integrating both positive and negative feedback to form a signed graph can lead to a more comprehensive understanding of user preferences. However, the existing efforts to incorporate both types of feedback are sparse and face two main limitations: 1) They process positive and negative feedback separately, which fails to holistically leverage the collaborative information within the signed graph; 2) They rely on MLPs or GNNs for information extraction from negative feedback, which may not be effective. To overcome these limitations, we introduce SIGformer, a new method that employs the transformer architecture to sign-aware graph-based recommendation. SIGformer incorporates two innovative positional encodings that capture the spectral properties and path patterns of the signed graph, enabling the full exploitation of the entire graph. Our extensive experiments across five real-world datasets demonstrate the superiority of SIGformer over state-of-the-art methods. The code is available at https://github.com/StupidThree/SIGformer.Comment: Accepted by SIGIR202

Distributionally Robust Graph-based Recommendation System

With the capacity to capture high-order collaborative signals, Graph Neural Networks (GNNs) have emerged as powerful methods in Recommender Systems (RS). However, their efficacy often hinges on the assumption that training and testing data share the same distribution (a.k.a. IID assumption), and exhibits significant declines under distribution shifts. Distribution shifts commonly arises in RS, often attributed to the dynamic nature of user preferences or ubiquitous biases during data collection in RS. Despite its significance, researches on GNN-based recommendation against distribution shift are still sparse. To bridge this gap, we propose Distributionally Robust GNN (DR-GNN) that incorporates Distributional Robust Optimization (DRO) into the GNN-based recommendation. DR-GNN addresses two core challenges: 1) To enable DRO to cater to graph data intertwined with GNN, we reinterpret GNN as a graph smoothing regularizer, thereby facilitating the nuanced application of DRO; 2) Given the typically sparse nature of recommendation data, which might impede robust optimization, we introduce slight perturbations in the training distribution to expand its support. Notably, while DR-GNN involves complex optimization, it can be implemented easily and efficiently. Our extensive experiments validate the effectiveness of DR-GNN against three typical distribution shifts. The code is available at https://github.com/WANGBohaO-jpg/DR-GNN.Comment: Accepted by WWW202

Pulmonary neuroendocrine cells: Crucial players in respiratory function and airway-nerve communication

Pulmonary neuroendocrine cells (PNECs) are unique airway epithelial cells that blend neuronal and endocrine functions, acting as key sensors in the lung. They respond to environmental stimuli like allergens by releasing neuropeptides and neurotransmitters. PNECs stand out as the only lung epithelial cells innervated by neurons, suggesting a significant role in airway-nerve communication via direct neural pathways and hormone release. Pathological conditions such as asthma are linked to increased PNECs counts and elevated calcitonin gene-related peptide (CGRP) production, which may affect neuroprotection and brain function. CGRP is also associated with neurodegenerative diseases, including Parkinson’s and Alzheimer’s, potentially due to its influence on inflammation and cholinergic activity. Despite their low numbers, PNECs are crucial for a wide range of functions, highlighting the importance of further research. Advances in technology for producing and culturing human PNECs enable the exploration of new mechanisms and cell-specific responses to targeted therapies for PNEC-focused treatments