3,463 research outputs found
Zero-Energy Modes from Coalescing Andreev States in a Two-Dimensional Semiconductor-Superconductor Hybrid Platform
We investigate zero-bias conductance peaks that arise from coalescing subgap
Andreev states, consistent with emerging Majorana zero modes, in hybrid
semiconductor-superconductor wires defined in a two-dimensional InAs/Al
heterostructure using top-down lithography and gating. The measurements
indicate a hard superconducting gap, ballistic tunneling contact, and in-plane
critical fields up to ~T. Top-down lithography allows complex geometries,
branched structures, and straightforward scaling to multicomponent devices
compared to structures made from assembled nanowires.Comment: Includes Supplementary Materia
Prediction of HLA class II alleles using SNPs in an African population
BACKGROUND:
Despite the importance of the human leukocyte antigen (HLA) gene locus in research and clinical practice, direct HLA typing is laborious and expensive. Furthermore, the analysis requires specialized software and expertise which are unavailable in most developing country settings. Recently, in silico methods have been developed for predicting HLA alleles using single nucleotide polymorphisms (SNPs). However, the utility of these methods in African populations has not been systematically evaluated.
METHODOLOGY/PRINCIPAL FINDINGS:
In the present study, we investigate prediction of HLA class II (HLA-DRB1 and HLA-DQB1) alleles using SNPs in the Wolaita population, southern Ethiopia. The subjects comprised 297 Ethiopians with genome-wide SNP data, of whom 188 had also been HLA typed and were used for training and testing the model. The 109 subjects with SNP data alone were used for empirical prediction using the multi-allelic gene prediction method. We evaluated accuracy of the prediction, agreement between predicted and HLA typed alleles, and discriminative ability of the prediction probability supplied by the model. We found that the model predicted intermediate (two-digit) resolution for HLA-DRB1 and HLA-DQB1 alleles at accuracy levels of 96% and 87%, respectively. All measures of performance showed high accuracy and reliability for prediction. The distribution of the majority of HLA alleles in the study was similar to that previously reported for the Oromo and Amhara ethnic groups from Ethiopia.
CONCLUSIONS/SIGNIFICANCE:
We demonstrate that HLA class II alleles can be predicted from SNP genotype data with a high level of accuracy at intermediate (two-digit) resolution in an African population. This finding offers new opportunities for HLA studies of disease epidemiology and population genetics in developing countrie
Galaxies at the extremes: Ultra-diffuse galaxies in the Virgo Cluster
We report the discovery of three large (R29 >~ 1 arcminute) extremely low
surface brightness (mu_(V,0) ~ 27.0) galaxies identified using our deep,
wide-field imaging of the Virgo Cluster from the Burrell Schmidt telescope.
Complementary data from the Next Generation Virgo Cluster Survey do not resolve
red giant branch stars in these objects down to i=24, yielding a lower distance
limit of 2.5 Mpc. At the Virgo distance, these objects have half-light radii
3-10 kpc and luminosities L_V=2-9x10^7 Lsun. These galaxies are comparable in
size but lower in surface brightness than the large ultradiffuse LSB galaxies
recently identified in the Coma cluster, and are located well within Virgo's
virial radius; two are projected directly on the cluster core. One object
appears to be a nucleated LSB in the process of being tidally stripped to form
a new Virgo ultracompact dwarf galaxy. The others show no sign of tidal
disruption, despite the fact that such objects should be most vulnerable to
tidal destruction in the cluster environment. The relative proximity of Virgo
makes these objects amenable to detailed studies of their structural properties
and stellar populations. They thus provide an important new window onto the
connection between cluster environment and galaxy evolution at the extremes.Comment: 7 pages, 4 figures, to appear in ApJ Letters. Updated with minor
revisions to match accepted versio
Galaxies at the extremes: Ultra-diffuse galaxies in the Virgo Cluster
We report the discovery of three large (R29 >~ 1 arcminute) extremely low
surface brightness (mu_(V,0) ~ 27.0) galaxies identified using our deep,
wide-field imaging of the Virgo Cluster from the Burrell Schmidt telescope.
Complementary data from the Next Generation Virgo Cluster Survey do not resolve
red giant branch stars in these objects down to i=24, yielding a lower distance
limit of 2.5 Mpc. At the Virgo distance, these objects have half-light radii
3-10 kpc and luminosities L_V=2-9x10^7 Lsun. These galaxies are comparable in
size but lower in surface brightness than the large ultradiffuse LSB galaxies
recently identified in the Coma cluster, and are located well within Virgo's
virial radius; two are projected directly on the cluster core. One object
appears to be a nucleated LSB in the process of being tidally stripped to form
a new Virgo ultracompact dwarf galaxy. The others show no sign of tidal
disruption, despite the fact that such objects should be most vulnerable to
tidal destruction in the cluster environment. The relative proximity of Virgo
makes these objects amenable to detailed studies of their structural properties
and stellar populations. They thus provide an important new window onto the
connection between cluster environment and galaxy evolution at the extremes.Comment: 7 pages, 4 figures, to appear in ApJ Letters. Updated with minor
revisions to match accepted versio
Do Beneficial Insect Habitats Also Provide Quality Brood Habitat for Northern Bobwhite?
Strips of fallow vegetation along cropland borders are an effective strategy for providing northern bobwhite (Colinus virginianus) habitat. However, a limitation of fallow borders is the lack of nectar-producing vegetation needed to sustain many beneficial insect populations. Planted borders that contain mixes of prairie flowers and grasses may harbor more diverse arthropod communities, but the relative value of these borders as bobwhite brood habitat compared to fallow borders is unknown. Vegetation composition likely has the largest influence on a field border’s structural characteristics, which consequently may impact bobwhite foraging efficiency. Thus, actively planting field borders may not yield the vegetative composition and structure needed to provide quality brood habitat. We used groups of 6 human-imprinted bobwhite chicks as a bioassay for comparing 4 different field border treatments (planted native warm season grasses (NWSG) and prairie flowers, planted prairie flowers only, fallow vegetation, or mowed vegetation) as brood habitat from June to August 2009 and 2010. All field border treatments (0.33 ha each) were established around 9 organic crop fields. Groups of chicks were led through borders for 30-min foraging trials and immediately euthanized at the end of each trial. Their crops and gizzards were dissected in the laboratory, and eaten arthropods were measured, counted, and identified to taxonomic family. We used allometric equations to estimate the live weight of all arthropods consumed, and to calculate a mean foraging rate (grams of arthropods consumed/ chick/30 min) for each field border treatment. We used a modified leaf blower-vacuum to sample arthropod prey availability and diversity in each field border treatment. Sampled arthropods were counted and identified to taxomomic family. We also calculated a Shannon-Weiner diversity index for each field border treatment. Foraging rate did not differ among border treatments in 2009 or 2010. Similarly, mean arthropod densities and diversity calculated from blower-vac samples did not differ among treatments in 2009 or 2010. Chick foraging rate was relatively high and arthropod prey was abundant even in mowed field borders. We suspect the amount of arthropod prey foods is likely not a limiting factor for bobwhite chicks in uncultivated habitats, rather, vegetative structure that facilitates movement, supports a suitable thermal micro-climate, and provides protection from predators is most important for bobwhite broods. Our results suggest that field borders planted for promoting beneficial insects provide bobwhite brood habitat equivalent to fallow borders. However, beneficial insect habitats are expensive, and require additional time and funding to insure successful establishment. The cost of establishing planted NWSG and prairie flowers and planted prairie flowers only borders in our study was ~ 1,773/ha, respectively. Fallow borders are likely the most cost-effective option for landowners/managers whose primary interest is providing bobwhite habitat
ABCD² risk score does not predict the presence of cerebral microemboli in patients with hyper-acute symptomatic critical carotid artery stenosis
ABCD² risk score and cerebral microemboli detected by transcranial Doppler (TCD) have been separately shown to the predict risk of recurrent acute stroke. We studied whether ABCD² risk score predicts cerebral microemboli in patients with hyper-acute symptomatic carotid artery stenosis.
We studied 206 patients presenting within 2 weeks of transient ischaemic attack or minor stroke and found to have critical carotid artery stenosis (≥50%). 86 patients (age 70±1 (SEM: years), 58 men, 83 Caucasian) had evidence of microemboli; 72 (84%) of these underwent carotid endarterectomy (CEA). 120 patients (age 72±1 years, 91 men, 113 Caucasian) did not have microemboli detected; 102 (85%) of these underwent CEA. Data were analysed using X2 and Mann-Whitney U tests and receiver operating characteristic (ROC) curves.
140/206 (68%: 95% CI 61.63 to 74.37) patients with hyper-acute symptomatic critical carotid stenosis had an ABCD2 risk score ≥4. There was no significant difference in the NICE red flag criterion for early assessment (ABCD² risk score ≥4) for patients with cerebral microemboli versus those without microemboli (59/86 vs 81/120 patients: OR 1.05 ABCD² risk score ≥4 (95% CI 0.58 to 1.90, p=0.867)). The ABCD² risk score was <4 in 27 of 86 (31%: 95% CI 21 to 41) embolising patients and in 39 of 120 (31%: 95% CI 23 to 39) without cerebral microemboli. After adjusting for pre-neurological event antiplatelet treatment (APT), area under the curve (AUC) of ROC for ABCD2 risk score showed no prediction of cerebral microemboli (no pre-event APT, n=57: AUC 0.45 (95% CI 0.29 to 0.60, p=0.531); pre-event APT, n=147: AUC 0.51 (95% CI 0.42 to 0.60, p=0.804)).
The ABCD² score did not predict the presence of cerebral microemboli or carotid disease in over one-quarter of patients with symptomatic critical carotid artery stenosis. On the basis of NICE guidelines (refer early if ABCD² ≥4), assessment of high stroke risk based on ABCD² scoring may lead to inappropriate delay in urgent treatment in many patients
How adults with a profound intellectual disability engage others in interaction
Using video records of everyday life in a residential home, we report on what
interactional practices are used by people with severe and profound
intellectual disabilities to initiate encounters. There were very few initiations,
and all presented difficulties to the interlocutor; one (which we call "blank
recipiency") gave the interlocutor virtually no information at all on which to
base a response. Only when the initiation was of a new phase in an interaction
already under way (for example, the initiation of an alternative trajectory of a
proposed physical move) was it likely to be successfully sustained. We show
how interlocutors (support staff; the recording researcher) responded to
initiations verbally, as if to neurotypical speakers - but inappropriately for
people unable to comprehend, or to produce well-fitted next turns. This misreliance
on ordinary speakers' conversational practices was one factor that
contributed to residents abandoning the interaction in almost all cases. We
discuss the dilemma confronting care workers
Exploring the knowledge ‘base’ of practitioners in the delivery of sustainable regeneration projects
In recent years, sustainable regeneration has been recognised as being of major economic and social concern in the world. In the UK for instance, government has initiated a number of policies and evaluation methods to deal with some of the environmental problems associated with regeneration projects. However, the post construction evaluation of these projects has often resulted in them being seen as not achieving their set objectives. Attempts aimed at evaluating the impact of sustainability by built environment practitioners have primarily been limited to their assessment of the projects’ potential environmental impacts, with the associated socio-economic impacts being neglected. There has not been any well-defined built environment research that has been able to deal holistically with the broader issues of sustainability in terms of benefits/impacts of the regeneration projects to the communities concerned. The findings of an exploratory study that adopted a semi-structured interview approach for data collection, to explore the knowledge and understanding of fifteen practitioners who are often involved in the delivery of these projects are presented. The findings reveal a lack of knowledge and understanding of sustainability as well as structured mechanism/practices for evaluating the socio-economic sustainability factors in relation to regeneration projects
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