Fluid Flow Property Estimation from Seismic Scattering Data

We present a methodology for relating seismic scattering signals from fractures to the fluid permeability field of the fracture network. The workflow is used to interpret seismic scattering signals for the reservoir permeability of the Emilio Field in the Adriatic Sea.Eni-MIT Energy Initiative Founding Member Progra

Permeability Estimates of Self-Affine Fracture Faults Based on Generalization of the Bottle Neck Concept

We propose a method for calculating the effective permeability of two-dimensional self-affine permeability fields based on generalizing the one-dimensional concept of a bottleneck. We test the method on fracture faults where the local permeability field is given by the cube of the aperture field. The method remains accurate even when there is substantial mechanical overlap between the two fracture surfaces. The computational efficiency of the method is comparable to calculating a simple average and is more than two orders of magnitude faster than solving the Reynolds equations using a finite-difference scheme

Niemann–Pick type C disease as proof-of-concept for intelligent biomarker panel selection in neurometabolic disorders

AIM: Using Niemann-Pick type C disease (NPC) as a paradigm, we aimed to improve biomarker discovery in patients with neurometabolic disorders. METHOD: Using a multiplexed liquid chromatography tandem mass spectrometry dried bloodspot assay, we developed a selective intelligent biomarker panel to monitor known biomarkers N-palmitoyl-O-phosphocholineserine and 3β,5α,6β-trihydroxy-cholanoyl-glycine as well as compounds predicted to be affected in NPC pathology. We applied this panel to a clinically relevant paediatric patient cohort (n = 75; 35 males, 40 females; mean age 7 years 6 months, range 4 days-19 years 8 months) presenting with neurodevelopmental and/or neurodegenerative pathology, similar to that observed in NPC. RESULTS: The panel had a far superior performance compared with individual biomarkers. Namely, NPC-related established biomarkers used individually had 91% to 97% specificity but the combined panel had 100% specificity. Moreover, multivariate analysis revealed long-chain isoforms of glucosylceramide were elevated and very specific for patients with NPC. INTERPRETATION: Despite advancements in next-generation sequencing and precision medicine, neurological non-enzymatic disorders remain difficult to diagnose and lack robust biomarkers or routine functional testing for genetic variants of unknown significance. Biomarker panels may have better diagnostic accuracy than individual biomarkers in neurometabolic disorders, hence they can facilitate more prompt disease identification and implementation of emerging targeted, disease-specific therapies

The palynological characterization and the pollen germination process of lily hybrid STAR GAZER

This paper presents the morphological characteristics of pollen of lily, hybrid Star Gazer: shape of pollen grains, exine ornamentation, size of pollen grain and number of germinative pores/pollen grain. Also on presents the characteristics of pollen germination process of the lily, hybrid Star Gazer. In this regard were carried pollen germination tests "in vitro" in wet rooms "van Tieghem." The nutrient medium that were used for inoculation of the pollen grains had different concentrations of sucrose, resulting several experimental variants. The pollen germination capacity was determined from time to time, thereby establishing the dynamics of this process for four days. Surprising was the fact that the highest values of germination potential were realized on medium without sugar. On the nutrient mediums with a moderate concentration in sucrose, the germination capacity of the hybrid lily was inhibited. During the first 24 hours after inoculation of the medium pollen occurs a significantly improved the pollen germination rate. In parallel with the determination of pollen germination capacity was analyzed and increasing the length of pollen tubes. This dynamic was also analyzed for four days. The longest pollen tubes were formed on the medium without sugar. As in the case of the germinating potential, after 24 hours from the inoculation of the pollen on medium has achieved a significant elongation of pollen tubes. Also, there is a direct and close corelation between the pollen tube length and the flower style length of the of which that they have to traverse in order to reach the ovul. The length of Lilium Star Gazer pollen tubes is positively correlated also with germination rat

Monitoring Keap1-Nrf2 interactions in single live cells

AbstractThe transcription factor NF-E2 p45-related factor 2 (Nrf2) and its negative regulator Kelch-like ECH associated protein 1 (Keap1) control the expression of nearly 500 genes with diverse cytoprotective functions. Keap1, a substrate adaptor protein for Cullin3/Rbx1 ubiquitin ligase, normally continuously targets Nrf2 for degradation, but loses this ability in response to electrophiles and oxidants (termed inducers). Consequently, Nrf2 accumulates and activates transcription of its downstream target genes. Many inducers are phytochemicals, and cruciferous vegetables represent one of the richest sources of inducer activity among the most commonly used edible plants. Here we summarize the discovery of the isothiocyanate sulforaphane as a potent inducer which reacts with cysteine sensors of Keap1, leading to activation of Nrf2. We then describe the development of a quantitative Förster resonance energy transfer (FRET)-based methodology combined with multiphoton fluorescence lifetime imaging microscopy (FLIM) to investigate the interactions between Keap1 and Nrf2 in single live cells, and the effect of sulforaphane, and other cysteine-reactive inducers, on the dynamics of the Keap1–Nrf2 protein complex. We present the experimental evidence for the “cyclic sequential attachment and regeneration” or “conformation cycling” model of Keap1-mediated Nrf2 degradation. Finally, we discuss the implications of this mode of regulation of Nrf2 for achieving a fine balance under normal physiological conditions, and the consequences and mechanisms of disrupting this balance for tumor biology

Multinational characterization of neurological phenotypes in patients hospitalized with COVID-19

Neurological complications worsen outcomes in COVID-19. To define the prevalence of neurological conditions among hospitalized patients with a positive SARS-CoV-2 reverse transcription polymerase chain reaction test in geographically diverse multinational populations during early pandemic, we used electronic health records (EHR) from 338 participating hospitals across 6 countries and 3 continents (January–September 2020) for a cross-sectional analysis. We assessed the frequency of International Classification of Disease code of neurological conditions by countries, healthcare systems, time before and after admission for COVID-19 and COVID-19 severity. Among 35,177 hospitalized patients with SARS-CoV-2 infection, there was an increase in the proportion with disorders of consciousness (5.8%, 95% confidence interval [CI] 3.7–7.8%, pFDR < 0.001) and unspecified disorders of the brain (8.1%, 5.7–10.5%, pFDR < 0.001) when compared to the pre-admission proportion. During hospitalization, the relative risk of disorders of consciousness (22%, 19–25%), cerebrovascular diseases (24%, 13–35%), nontraumatic intracranial hemorrhage (34%, 20–50%), encephalitis and/or myelitis (37%, 17–60%) and myopathy (72%, 67–77%) were higher for patients with severe COVID-19 when compared to those who never experienced severe COVID-19. Leveraging a multinational network to capture standardized EHR data, we highlighted the increased prevalence of central and peripheral neurological phenotypes in patients hospitalized with COVID-19, particularly among those with severe disease

PlnTFDB: updated content and new features of the plant transcription factor database

The Plant Transcription Factor Database (PlnTFDB; http://plntfdb.bio.uni-potsdam.de/v3.0/) is an integrative database that provides putatively complete sets of transcription factors (TFs) and other transcriptional regulators (TRs) in plant species (sensu lato) whose genomes have been completely sequenced and annotated. The complete sets of 84 families of TFs and TRs from 19 species ranging from unicellular red and green algae to angiosperms are included in PlnTFDB, representing >1.6 billion years of evolution of gene regulatory networks. For each gene family, a basic description is provided that is complemented by literature references, and multiple sequence alignments of protein domains. TF or TR gene entries include information of expressed sequence tags, 3D protein structures of homologous proteins, domain architecture and cross-links to other computational resources online. Moreover, the different species in PlnTFDB are linked to each other by means of orthologous genes facilitating cross-species comparisons

Altitude and growth: A study of the patterns of physical growth of a high altitude Peruvian Quechua population

Data on physical growth were obtained for a sample of 1202 Quechua subjects, aged 2 to 35 years from the district of NuÑoa, Puno, located in the southern highlands (altitude 4000–5500m) of Peru. These data were supplemented by a three-year longitudinal study of 300 subjects, aged 1 to 22 years. The patterns of physical growth of members of the indigenous population of NuÑoa are characterized by (1) late sexual dimorphism, (2) slow and prolonged growth in body size, (3) late and poorly defined adolescent stature spurt in both males and females, and (4) accelerated development in chest size. The socio-economic factors associated with urban-rural and altitude differences appear to be reflected in greater deposition of subcutaneous fat and increased weight but do not seem to influence the development of stature. We suggest the pattern of growth of this population is related to the hypoxic effects of high altitude, and/or reflects a genetic adaptation to such stress. The anthropometric and physiological studies conducted during this and previous studies and the comparative data from Peruvian populations situated at lower altitudes document the specific adaptive response of the chest wall to the hypoxic effects of high altitude.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/37500/1/1330320217_ftp.pd

Minimization of free radical damage by metal catalysis of multivitamin/multimineral supplements

Multivitamin/multimineral complexes are the most common dietary supplements. Unlike minerals in foods that are incorporated in bioorganic structures, minerals in dietary supplements are typically in an inorganic form. These minerals can catalyze the generation of free radicals, thereby oxidizing antioxidants during digestion. Here we examine the ability of a matrix consisting of an amino acid and non-digestible oligosaccharide (AAOS) to blunt metal-catalyzed oxidations. Monitoring of ascorbate radical generated by copper shows that ascorbate is oxidized more slowly with the AAOS matrix than with copper sulfate. Measurement of the rate of oxidation of ascorbic acid and Trolox® by catalytic metals confirmed the ability of AAOS to slow these oxidations. Similar results were observed with iron-catalyzed formation of hydroxyl radicals. When compared to traditional forms of minerals used in supplements, we conclude that the oxidative loss of antioxidants in solution at physiological pH is much slower when AAOS is present