RNA : DNA ratio and other nucleic acid derived indices in marine ecology

Some of most used indicators in marine ecology are nucleic acid-derived indices. They can be divided by target levels in three groups: 1) at the organism level as ecophysiologic indicators, indicators such as RNA:DNA ratios, DNA:dry weight and RNA:protein, 2) at the population level, indicators such as growth rate, starvation incidence or fisheries impact indicators, and 3) at the community level, indicators such as trophic interactions, exergy indices and prey identification. The nucleic acids derived indices, especially RNA:DNA ratio, have been applied with success as indicators of nutritional condition, well been and growth in marine organisms. They are also useful as indicators of natural or anthropogenic impacts in marine population and communities, such as upwelling or dredge fisheries, respectively. They can help in understanding important issues of marine ecology such as trophic interactions in marine environment, fish and invertebrate recruitment failure and biodiversity changes, without laborious work of counting, measuring and identification of small marine organisms. Besides the objective of integrate nucleic acid derived indices across levels of organization, the paper will also include a general characterization of most used nucleic acid derived indices in marine ecology and also advantages and limitations of them. We can conclude that using indicators, such RNA:DNA ratios and other nucleic acids derived indices concomitantly with organism and ecosystems measures of responses to climate change (distribution, abundance, activity, metabolic rate, survival) will allow for the development of more rigorous and realistic predictions of the effects of anthropogenic climate change on marine systems

Erasmus Mundus Master Course in Ecohydrology - an opportunity for global water education challenges

Aquatic ecosystem health has become a focus for global attention. Human population growth and climate variability are affecting both the quantity and quality of the water at a global scale. Despite the fact that Earth is the blue planet, only 3% of Earth's total water is freshwater, and only 0.03% is both accessible and suitable for human use. Estuarine and coastal ecosystems are the end points of continental discharges and pollutants, and are also being impacted by sea level rise. The recognition of the dimension of the threat led major world regions and economies to establish, often recently, protective regulations such as the Water Framework Directive in Europe (2000), the Water Law of the People's Republic of China (2002) or the Clean Water Act in the USA (1972)

Estuarine ecohydrology

Throughout the world, estuaries and coastal waters have experienced environmental degradation. Present proposed remedial measures based on engineering and technological fix have been unable to restore the ecological processes of a healthy, robust estuary and, as such, will not reinstate the full beneficial functions of the estuary ecosystem

Sistemática, ecologia e dinâmica de larvas e pós-larvas de bivalves na Ria Formosa

Tese de Doutoramento, Ciências Biológicas, Unidade de Ciências e Tecnologias dos Recursos Aquáticos, Universidade do Algarve, 1996Com este trabalho pretendeu-se caracterizar as larvas e pós-larvas de bivalves da Ria Formosa em termos sistemáticos, ecológicos e dinâmicos.The aim of this work was to characterise the bivalve larvae and post-larvae populations of the Ria Formosa in systematic, ecological and dynamic terms

Effects of hydraulic dredging on the physiological responses of the target species Chamelea gallina (Mollusca: Bivalvia): laboratory experiments and field surveys

The effects of mechanical stress in the Venus clam Chamelea gallina during hydraulic dredging were assessed in both laboratory and field studies in order to measure physiological biomarkers at organism level (clearance rate, respiration rate, scope for growth, and survival in air test)

Changes in benthic community structure due to clam dredging on the Algarve coast and the importance of seasonal analysis

Patterns in community structure of meiofauna and macrofauna in relation to Portuguese clam dredging were compared during a 2-y-period o¡ Lagos and Vilamoura, south Portugal. SCUBA divers randomly sampled corer and quadrat samples before and immediately after simulating commercial dredge ¢shery. Univariate measures (abundance, number of taxa, evenness, diversity and biomass) and multivariate analyses (Cluster, MDS and SIMPER) revealed changes in the meio- and macro-benthic community structure caused by dredge disturbance (short-term e¡ects), with a general decrease in all measures.Macrofauna were found to be more sensitive to dredge disturbance, and aggressive predatory behaviour was observed after disturbance in the continuously dredged area. Nevertheless, higher signi¢cant natural changes were found between seasonal periods, indicating that dredging may only cause a small-scale and short-term impact

Macrobenthic response to sewage discharges in confined areas from coastal lagoons: implication on the ecological quality status

We studied the effect of wastewater on macrobenthic assemblages and local Ecological Quality Status (EcoQS) along a pollution gradient. The study consisted of six sampling sites surrounding the discharge channel of a Wastewater Treatment Plant located within Ria Formosa coastal lagoon. The total number of individuals was significantly higher at the discharge point comparatively to the control site, while total number of species, species richness and diversity values revealed the opposite pattern. Deposit-feeding were the most abundant trophic group, particularly at the inner sites, while the highest contributions of suspension-feeding and carnivory groups were observed at external ones. The organic matter content was positively correlated with the deposit-feeding group conferring a structural character of this variable near the plant discharge. M-AMBI index was consistent with the ANOSIM and SIMPER analysis, successfully separating the sampling stations according to the distance from the discharge and distinguishing the lower EcoQS of the inner sites not complying with the requirements of the Water Framework Directive of a “Good” quality status. In addition, changes in ecological and biotic indices were negatively correlated with variations of organic matter and positively correlated with salinity, corroborating the effect of these variables on the composition and structure of macrobenthic communities

Recovery of substrates and macro-benthos after fishing trials with a new Portuguese clam dredge

The effect of dredging on bottom structure was assessed, to estimate the damage inflicted on the benthic macrofauna left on the dredge path and to evaluate aggregations of scavengers within the track. Sediment suspended during dredging rapidly resettled both on sand and sandy-mud bottoms. Dredge tracks were deeper on sandy-mud sediments and persisted longer than in sandy sediments. The disappearance of tracks in both sediment types depended both on current strength and wave action. Damage and mortality induced by dredging on the macrobenthic animals left on the dredge path was relatively low. Post-fishing diver observations showed that damaged animals left on the dredge path rapidly attracted scavengers, mainly Ophiura albida. Immediately after the tow ophiuras reached densities 8 times greater in the track region than in the background. However, they dispersed again rapidly because only few damaged fauna were available on the dredge tracks. Undamaged or slightly damaged shellfish started to rebury immediately after escaping from the dredge

The Asian clam Corbicula fluminea (Müller, 1774) in the Guadiana River Basin (southwestern Iberian Peninsula): setting the record strait

This paper aims to set the record straight regarding the first observations of Corbicula fluminea (Müller, 1775) in the Guadiana River Basin. According to the available data, C. fluminea was first observed in 1988 and not in 2006 as suggested by Pérez-Bote and Fernandéz (2008). The first observations of C. fluminea in the Guadiana estuary were reported in 2000. In 2003, C. fluminea was already well established in the estuary and in many rivers and streams. C. fluminea is likely to expand its current biogeographic distribution in Portugal, since suitable lentic habitats for colonization will be created by the implementation of the “National program of dams with high hydraulic potential”, which should be concluded by 2016

Estimation of starvation and diet variation of the RNA/DNA ratios in field-caught Sardina pilchardus larvae off the north of Spain

The aim of this study was to analyse the general larval condition, to determine the lncidence of starvation and to investigate the effect of time of day on RNA/DNA ratios among field-caught Sardina pilchardus (L.) larvae. The larvae were collected during 4 research cruises off northern Spain, during March, April, May and June 1992. A highly sensitive fluorometric method for nucleic acid quantification was applied to larvae of S. pilchardus. The means of the RNA/DNA ratio were relat~vely high, so the larvae collected off northern Spain were generally in good condition. Low percentages of starving larvae (RNA/DNA ratio less than 1.3), ranging from 0 to 3.23%, were found over the 4 mo. The RNA/DNA ratios were significantly correlated with zooplankton biomass. Larvae collected at night revealed higher RNA/DNA ratios compared to larvae caught during the day. This seems to indicate that there is some endogenous rhythm in the production of RNA. It would then follow that, if there are die1 changes in RNA concentrations, average RNA Indices can be unrepresentative if there IS any day/night bias in sampling