Additional file 1: Table S1. of Non-contiguous finished genome sequence and description of Clostridium ihumii sp. nov.

Differential characteristics of C. ihumii AP5T, Clostridium beijerinckii strain NCIMB 8052, Clostridium botulinum strain ATCC 3502, Clostridium carboxidivorans strain P7, Clostridium dakarensestrain FF1, Clostridium difficile strain B1, Clostridium perfringens strain ATCC 13124, and C. senegalense strain JC122

Characteristics of reference viruses.

<p>Characteristics of reference viruses.</p

Nucleic acid profiles analyzed on a 2100 Expert Agilent Analyzer.

<p>A. RNA profile of an EMEM sample spiked with the reference viruses before (red) and after (blue) viral purification, run on a Pico RNA chip. B. DNA profile of a dsDNA sample (originated from RNA) amplified either with Froussard (red), Wang (blue) or Victoria (green) random PCR, run on a DNA7500 chip.</p

Comparison of the 3 random PCR reactions in engorged lice metagenomes according to: A. reference genome coverage. B. General taxonomic assignment of reads.

<p>Comparison of the 3 random PCR reactions in engorged lice metagenomes according to: A. reference genome coverage. B. General taxonomic assignment of reads.</p

General overview of the protocol.

<p>General overview of the protocol.</p

Additional file 3: Figure S2. of Non contiguous-finished genome sequence and description of Microbacterium gorillae sp. nov.

Gel view comparing Microbacterium gorillae strain G3T spectra with other members of the genus Microbacterium. The gel view displays the raw spectra of all loaded spectrum files arranged in a pseudo-gel like look. The x-axis records the m/z value. The left y-axis displays the running spectrum number originating from subsequent spectra loading. The peak intensity is expressed by a gray-scale scheme code. The color bar and the right y-axis indicate the relation between the color a peak is displayed with and the peak intensity in arbitrary units. Displayed species are indicated on the right. (PPTX 76 kb

Genus relative abundance by individual.

<p>Obese and normal weight individuals are represented by red and blue nodes, respectively. A colored node corresponds to the identification of a genus for one individual. The node size is proportional to the normalized genus abundance.</p

Relative abundance of anaerobic and aerobic genera of the duodenal microbiota.

<p>The source black nodes are the obese and the normal weight groups (five individuals by group). The blue and red nodes are the aerobic and anaerobic genera identified in the groups, respectively. The genus node is linked by an edge to it source node. The genus relative abundance is given by the node size. Finally, two genera shared by the obese and normal weight groups are linked by an additional edge. The Cytoscape network visualization tool version 3.1.0 was used for building this figure.</p