An Overview of the Use of the SimSphere Soil Vegetation Atmosphere Transfer (SVAT) Model for the Study of Land-Atmosphere Interactions

Soil Vegetation Atmosphere Transfer (SVAT) models consist of deterministic mathematical representations of the physical processes involved between the land surface and the atmosphere and of their interactions, at time-steps acceptable for the study of land surface processes. The present article provides a comprehensive and systematic review of one such SVAT model suitable for use in mesoscale or boundary layer studies, originally developed by [1]. This model, which has evolved significantly both architecturally and functionally since its foundation, has been widely applied in over thirty interdisciplinary science investigations, and it is currently used as a learning resource for students in a number of educational institutes globally. The present review is also regarded as very timely, since a variation of a method using this specific SVAT model along with satellite observations is currently being considered in a scheme being developed for the operational retrieval of soil surface moisture by the US National Polar-orbiting Operational Environmental Satellite System (NPOESS), in a series of satellites that are due to be launched from 2016 onwards

Auxiliary field diffusion Monte Carlo calculations of magnetic moments of light nuclei with chiral EFT interactions

We calculate the magnetic moments of light nuclei ($A < 20$) using the auxiliary field diffusion Monte Carlo method and local two- and three-nucleon forces with electromagnetic currents from chiral effective field theory. For all nuclei under consideration, we also calculate the ground-state energies and charge radii. We generally find a good agreement with experimental values for all of these observables. For the electromagnetic currents, we explore the impact of employing two different power countings, and study theoretical uncertainties stemming from the truncation of the chiral expansion order-by-order for select nuclei within these two approaches. We find that it is crucial to employ consistent power countings for interactions and currents to achieve a systematic order-by-order convergence.Comment: 7 pages, 4 figures, supplemental materia

Complete Analysis of Baryon Magnetic Moments in 1/N_c

We generate a complete basis of magnetic moment operators for the N_c = 3 ground-state baryons in the 1/N_c expansion, and compute and tabulate all associated matrix elements. We then compare to previous results derived in the literature and predict additional relations among baryon magnetic moments holding to subleading order in 1/N_c and flavor SU(3) breaking. Finally, we predict all unknown diagonal and transition magnetic moments to <= 0.15 mu_N accuracy, and suggest possible experimental measurements to improve the analysis even further.Comment: 28 pages (including 11 tables), ReVTeX. One reference and grant acknowledgment adde

The BCS Functional for General Pair Interactions

The Bardeen-Cooper-Schrieffer (BCS) functional has recently received renewed attention as a description of fermionic gases interacting with local pairwise interactions. We present here a rigorous analysis of the BCS functional for general pair interaction potentials. For both zero and positive temperature, we show that the existence of a non-trivial solution of the nonlinear BCS gap equation is equivalent to the existence of a negative eigenvalue of a certain linear operator. From this we conclude the existence of a critical temperature below which the BCS pairing wave function does not vanish identically. For attractive potentials, we prove that the critical temperature is non-zero and exponentially small in the strength of the potential.Comment: Revised Version. To appear in Commun. Math. Phys

A Conjecture about Hadrons

We conjecture that in the chiral limit of QCD the spectrum of hadrons is comprised of decoupled, reducible chiral multiplets. A simple rule is developed which identifies the chiral representations filled out by the ground-state hadrons. Our arguments are based on the algebraic structure of superconvergence relations derived by Weinberg from the high-energy behavior of pion-hadron scattering amplitudes.Comment: 15 pages LaTe

The global distribution of Bacillus anthracis and associated anthrax risk to humans, livestock and wildlife.

Bacillus anthracis is a spore-forming, Gram-positive bacterium responsible for anthrax, an acute infection that most significantly affects grazing livestock and wild ungulates, but also poses a threat to human health. The geographic extent of B. anthracis is poorly understood, despite multi-decade research on anthrax epizootic and epidemic dynamics; many countries have limited or inadequate surveillance systems, even within known endemic regions. Here, we compile a global occurrence dataset of human, livestock and wildlife anthrax outbreaks. With these records, we use boosted regression trees to produce a map of the global distribution of B. anthracis as a proxy for anthrax risk. We estimate that 1.83 billion people (95% credible interval (CI): 0.59-4.16 billion) live within regions of anthrax risk, but most of that population faces little occupational exposure. More informatively, a global total of 63.8 million poor livestock keepers (95% CI: 17.5-168.6 million) and 1.1 billion livestock (95% CI: 0.4-2.3 billion) live within vulnerable regions. Human and livestock vulnerability are both concentrated in rural rainfed systems throughout arid and temperate land across Eurasia, Africa and North America. We conclude by mapping where anthrax risk could disrupt sensitive conservation efforts for wild ungulates that coincide with anthrax-prone landscapes

Software for Computing and Annotating Genomic Ranges

We describe Bioconductor infrastructure for representing and computing on annotated genomic ranges and integrating genomic data with the statistical computing features of R and its extensions. At the core of the infrastructure are three packages: IRanges, GenomicRanges, and GenomicFeatures. These packages provide scalable data structures for representing annotated ranges on the genome, with special support for transcript structures, read alignments and coverage vectors. Computational facilities include efficient algorithms for overlap and nearest neighbor detection, coverage calculation and other range operations. This infrastructure directly supports more than 80 other Bioconductor packages, including those for sequence analysis, differential expression analysis and visualization

ISICSoo: a class for the calculation of ionization cross sections from ECPSSR and PWBA theory

ISICS, originally a C language program for calculating K-, L- and M-shell ionization and X-ray production cross sections from ECPSSR and PWBA theory, has been reengineered into a C++ language class, named ISICSoo. The new software design enables the use of ISICS functionality in other software systems. The code, originally developed for Microsoft Windows operating systems, has been ported to Linux and Mac OS platforms to facilitate its use in a wider scientific environment. The reengineered software also includes some fixes to the original implementation, which ensure more robust computational results and a review of some physics parameters used in the computation. The paper describes the software design and the modifications to the implementation with respect to the previous version; it also documents the test process and provides some indications about the software performance.Comment: Preprint submitted to Computer Physics Communication