16 research outputs found
Energetics and Bonding in Aluminosilicate Rings with Alkali Metal and Alkaline-Earth Metal Charge-Compensating Cations
The stabilizing effect of alkali and alkaline-earth metal
ions on the oxygen donors of four- and six-membered <i>faujausite</i>-like rings has been calculated in terms of Kohn–Sham core-level
(O1s) energy shifts with respect to these same complexes without cations.
The results confirm and complement earlier investigations by Vayssilov
and co-workers where Na<sup>+</sup> and K<sup>+</sup> were the only
complexing cations. The oxygen donor centers in six-membered rings
are stabilized by −3.6 ± 0.4, −3.9 ± 0.5,
−7.3 ± 0.1, and −7.6 ± 0.2 eV by K<sup>+</sup>, Na<sup>+</sup>, Ca<sup>2+</sup>, and Mg<sup>2+</sup> adions, respectively.
The energy shifts are even greater for four-membered rings where the
stabilization effects attain −3.7 ± 0.1, −4.1 ±
0.1, −8.1 ± 0.1, and −9.0 ± 0.1 eV, respectively.
These effects are also observed on the low-lying σ-bonding and
antibonding molecular orbitals (MOs) of the oxygen framework, but
in a less systematic fashion. Clear relationships with the core-level
shifts are found when the effects of alkali metal complexation are
evaluated through electron localization/delocalization indices, which
are defined in terms of the whole wave function and not just of the
individual orbitals. Complexation with cations not only involves a
small but significant electron sharing of the cation with the oxygen
atoms in the ring but also enhances electron exchange among oxygen
atoms while reducing that between the O atoms and the Si or Al atoms
bonded to them. Such changes slightly increase from Na to K and from
Mg to Ca, whereas they are significantly enhanced for alkaline-earth
metals relative to alkali metals. With respect to Al-free complexes,
Si/Al substitution and cation charge compensation generally enhance
electron delocalization among the O atoms, except between those that
are linked through an Al atom, and cause either an increased or a
decreased Si–O ionicity (smaller/higher electron exchange)
depending on the position of O in the chain relative to the Al atom(s).
The generally increased electron delocalization among O atoms in the
ring is induced by significant electron transfer from the adsorbed
metal to the atoms in the ring. This same transfer establishes an
electric field that leads to a noticeable change in the ring-atom
core-level energies. The observed shifts are larger for the oxygen
atoms because, being negatively charged, they are more easily polarizable
than Al and Si. The enhanced electron delocalization among O atoms
upon cation complexation is also manifest in Pauling’s double-bond
nature of the bent σ-bonding MO between nonadjacent oxygen centers
in O-based ring structures
Energetics and Bonding in Aluminosilicate Rings with Alkali Metal and Alkaline-Earth Metal Charge-Compensating Cations
The stabilizing effect of alkali and alkaline-earth metal
ions on the oxygen donors of four- and six-membered <i>faujausite</i>-like rings has been calculated in terms of Kohn–Sham core-level
(O1s) energy shifts with respect to these same complexes without cations.
The results confirm and complement earlier investigations by Vayssilov
and co-workers where Na<sup>+</sup> and K<sup>+</sup> were the only
complexing cations. The oxygen donor centers in six-membered rings
are stabilized by −3.6 ± 0.4, −3.9 ± 0.5,
−7.3 ± 0.1, and −7.6 ± 0.2 eV by K<sup>+</sup>, Na<sup>+</sup>, Ca<sup>2+</sup>, and Mg<sup>2+</sup> adions, respectively.
The energy shifts are even greater for four-membered rings where the
stabilization effects attain −3.7 ± 0.1, −4.1 ±
0.1, −8.1 ± 0.1, and −9.0 ± 0.1 eV, respectively.
These effects are also observed on the low-lying σ-bonding and
antibonding molecular orbitals (MOs) of the oxygen framework, but
in a less systematic fashion. Clear relationships with the core-level
shifts are found when the effects of alkali metal complexation are
evaluated through electron localization/delocalization indices, which
are defined in terms of the whole wave function and not just of the
individual orbitals. Complexation with cations not only involves a
small but significant electron sharing of the cation with the oxygen
atoms in the ring but also enhances electron exchange among oxygen
atoms while reducing that between the O atoms and the Si or Al atoms
bonded to them. Such changes slightly increase from Na to K and from
Mg to Ca, whereas they are significantly enhanced for alkaline-earth
metals relative to alkali metals. With respect to Al-free complexes,
Si/Al substitution and cation charge compensation generally enhance
electron delocalization among the O atoms, except between those that
are linked through an Al atom, and cause either an increased or a
decreased Si–O ionicity (smaller/higher electron exchange)
depending on the position of O in the chain relative to the Al atom(s).
The generally increased electron delocalization among O atoms in the
ring is induced by significant electron transfer from the adsorbed
metal to the atoms in the ring. This same transfer establishes an
electric field that leads to a noticeable change in the ring-atom
core-level energies. The observed shifts are larger for the oxygen
atoms because, being negatively charged, they are more easily polarizable
than Al and Si. The enhanced electron delocalization among O atoms
upon cation complexation is also manifest in Pauling’s double-bond
nature of the bent σ-bonding MO between nonadjacent oxygen centers
in O-based ring structures
Energetics and Bonding in Aluminosilicate Rings with Alkali Metal and Alkaline-Earth Metal Charge-Compensating Cations
The stabilizing effect of alkali and alkaline-earth metal
ions on the oxygen donors of four- and six-membered <i>faujausite</i>-like rings has been calculated in terms of Kohn–Sham core-level
(O1s) energy shifts with respect to these same complexes without cations.
The results confirm and complement earlier investigations by Vayssilov
and co-workers where Na<sup>+</sup> and K<sup>+</sup> were the only
complexing cations. The oxygen donor centers in six-membered rings
are stabilized by −3.6 ± 0.4, −3.9 ± 0.5,
−7.3 ± 0.1, and −7.6 ± 0.2 eV by K<sup>+</sup>, Na<sup>+</sup>, Ca<sup>2+</sup>, and Mg<sup>2+</sup> adions, respectively.
The energy shifts are even greater for four-membered rings where the
stabilization effects attain −3.7 ± 0.1, −4.1 ±
0.1, −8.1 ± 0.1, and −9.0 ± 0.1 eV, respectively.
These effects are also observed on the low-lying σ-bonding and
antibonding molecular orbitals (MOs) of the oxygen framework, but
in a less systematic fashion. Clear relationships with the core-level
shifts are found when the effects of alkali metal complexation are
evaluated through electron localization/delocalization indices, which
are defined in terms of the whole wave function and not just of the
individual orbitals. Complexation with cations not only involves a
small but significant electron sharing of the cation with the oxygen
atoms in the ring but also enhances electron exchange among oxygen
atoms while reducing that between the O atoms and the Si or Al atoms
bonded to them. Such changes slightly increase from Na to K and from
Mg to Ca, whereas they are significantly enhanced for alkaline-earth
metals relative to alkali metals. With respect to Al-free complexes,
Si/Al substitution and cation charge compensation generally enhance
electron delocalization among the O atoms, except between those that
are linked through an Al atom, and cause either an increased or a
decreased Si–O ionicity (smaller/higher electron exchange)
depending on the position of O in the chain relative to the Al atom(s).
The generally increased electron delocalization among O atoms in the
ring is induced by significant electron transfer from the adsorbed
metal to the atoms in the ring. This same transfer establishes an
electric field that leads to a noticeable change in the ring-atom
core-level energies. The observed shifts are larger for the oxygen
atoms because, being negatively charged, they are more easily polarizable
than Al and Si. The enhanced electron delocalization among O atoms
upon cation complexation is also manifest in Pauling’s double-bond
nature of the bent σ-bonding MO between nonadjacent oxygen centers
in O-based ring structures
Energetics and Bonding in Aluminosilicate Rings with Alkali Metal and Alkaline-Earth Metal Charge-Compensating Cations
The stabilizing effect of alkali and alkaline-earth metal
ions on the oxygen donors of four- and six-membered <i>faujausite</i>-like rings has been calculated in terms of Kohn–Sham core-level
(O1s) energy shifts with respect to these same complexes without cations.
The results confirm and complement earlier investigations by Vayssilov
and co-workers where Na<sup>+</sup> and K<sup>+</sup> were the only
complexing cations. The oxygen donor centers in six-membered rings
are stabilized by −3.6 ± 0.4, −3.9 ± 0.5,
−7.3 ± 0.1, and −7.6 ± 0.2 eV by K<sup>+</sup>, Na<sup>+</sup>, Ca<sup>2+</sup>, and Mg<sup>2+</sup> adions, respectively.
The energy shifts are even greater for four-membered rings where the
stabilization effects attain −3.7 ± 0.1, −4.1 ±
0.1, −8.1 ± 0.1, and −9.0 ± 0.1 eV, respectively.
These effects are also observed on the low-lying σ-bonding and
antibonding molecular orbitals (MOs) of the oxygen framework, but
in a less systematic fashion. Clear relationships with the core-level
shifts are found when the effects of alkali metal complexation are
evaluated through electron localization/delocalization indices, which
are defined in terms of the whole wave function and not just of the
individual orbitals. Complexation with cations not only involves a
small but significant electron sharing of the cation with the oxygen
atoms in the ring but also enhances electron exchange among oxygen
atoms while reducing that between the O atoms and the Si or Al atoms
bonded to them. Such changes slightly increase from Na to K and from
Mg to Ca, whereas they are significantly enhanced for alkaline-earth
metals relative to alkali metals. With respect to Al-free complexes,
Si/Al substitution and cation charge compensation generally enhance
electron delocalization among the O atoms, except between those that
are linked through an Al atom, and cause either an increased or a
decreased Si–O ionicity (smaller/higher electron exchange)
depending on the position of O in the chain relative to the Al atom(s).
The generally increased electron delocalization among O atoms in the
ring is induced by significant electron transfer from the adsorbed
metal to the atoms in the ring. This same transfer establishes an
electric field that leads to a noticeable change in the ring-atom
core-level energies. The observed shifts are larger for the oxygen
atoms because, being negatively charged, they are more easily polarizable
than Al and Si. The enhanced electron delocalization among O atoms
upon cation complexation is also manifest in Pauling’s double-bond
nature of the bent σ-bonding MO between nonadjacent oxygen centers
in O-based ring structures
Energetics and Bonding in Aluminosilicate Rings with Alkali Metal and Alkaline-Earth Metal Charge-Compensating Cations
The stabilizing effect of alkali and alkaline-earth metal
ions on the oxygen donors of four- and six-membered <i>faujausite</i>-like rings has been calculated in terms of Kohn–Sham core-level
(O1s) energy shifts with respect to these same complexes without cations.
The results confirm and complement earlier investigations by Vayssilov
and co-workers where Na<sup>+</sup> and K<sup>+</sup> were the only
complexing cations. The oxygen donor centers in six-membered rings
are stabilized by −3.6 ± 0.4, −3.9 ± 0.5,
−7.3 ± 0.1, and −7.6 ± 0.2 eV by K<sup>+</sup>, Na<sup>+</sup>, Ca<sup>2+</sup>, and Mg<sup>2+</sup> adions, respectively.
The energy shifts are even greater for four-membered rings where the
stabilization effects attain −3.7 ± 0.1, −4.1 ±
0.1, −8.1 ± 0.1, and −9.0 ± 0.1 eV, respectively.
These effects are also observed on the low-lying σ-bonding and
antibonding molecular orbitals (MOs) of the oxygen framework, but
in a less systematic fashion. Clear relationships with the core-level
shifts are found when the effects of alkali metal complexation are
evaluated through electron localization/delocalization indices, which
are defined in terms of the whole wave function and not just of the
individual orbitals. Complexation with cations not only involves a
small but significant electron sharing of the cation with the oxygen
atoms in the ring but also enhances electron exchange among oxygen
atoms while reducing that between the O atoms and the Si or Al atoms
bonded to them. Such changes slightly increase from Na to K and from
Mg to Ca, whereas they are significantly enhanced for alkaline-earth
metals relative to alkali metals. With respect to Al-free complexes,
Si/Al substitution and cation charge compensation generally enhance
electron delocalization among the O atoms, except between those that
are linked through an Al atom, and cause either an increased or a
decreased Si–O ionicity (smaller/higher electron exchange)
depending on the position of O in the chain relative to the Al atom(s).
The generally increased electron delocalization among O atoms in the
ring is induced by significant electron transfer from the adsorbed
metal to the atoms in the ring. This same transfer establishes an
electric field that leads to a noticeable change in the ring-atom
core-level energies. The observed shifts are larger for the oxygen
atoms because, being negatively charged, they are more easily polarizable
than Al and Si. The enhanced electron delocalization among O atoms
upon cation complexation is also manifest in Pauling’s double-bond
nature of the bent σ-bonding MO between nonadjacent oxygen centers
in O-based ring structures
Energetics and Bonding in Aluminosilicate Rings with Alkali Metal and Alkaline-Earth Metal Charge-Compensating Cations
The stabilizing effect of alkali and alkaline-earth metal
ions on the oxygen donors of four- and six-membered <i>faujausite</i>-like rings has been calculated in terms of Kohn–Sham core-level
(O1s) energy shifts with respect to these same complexes without cations.
The results confirm and complement earlier investigations by Vayssilov
and co-workers where Na<sup>+</sup> and K<sup>+</sup> were the only
complexing cations. The oxygen donor centers in six-membered rings
are stabilized by −3.6 ± 0.4, −3.9 ± 0.5,
−7.3 ± 0.1, and −7.6 ± 0.2 eV by K<sup>+</sup>, Na<sup>+</sup>, Ca<sup>2+</sup>, and Mg<sup>2+</sup> adions, respectively.
The energy shifts are even greater for four-membered rings where the
stabilization effects attain −3.7 ± 0.1, −4.1 ±
0.1, −8.1 ± 0.1, and −9.0 ± 0.1 eV, respectively.
These effects are also observed on the low-lying σ-bonding and
antibonding molecular orbitals (MOs) of the oxygen framework, but
in a less systematic fashion. Clear relationships with the core-level
shifts are found when the effects of alkali metal complexation are
evaluated through electron localization/delocalization indices, which
are defined in terms of the whole wave function and not just of the
individual orbitals. Complexation with cations not only involves a
small but significant electron sharing of the cation with the oxygen
atoms in the ring but also enhances electron exchange among oxygen
atoms while reducing that between the O atoms and the Si or Al atoms
bonded to them. Such changes slightly increase from Na to K and from
Mg to Ca, whereas they are significantly enhanced for alkaline-earth
metals relative to alkali metals. With respect to Al-free complexes,
Si/Al substitution and cation charge compensation generally enhance
electron delocalization among the O atoms, except between those that
are linked through an Al atom, and cause either an increased or a
decreased Si–O ionicity (smaller/higher electron exchange)
depending on the position of O in the chain relative to the Al atom(s).
The generally increased electron delocalization among O atoms in the
ring is induced by significant electron transfer from the adsorbed
metal to the atoms in the ring. This same transfer establishes an
electric field that leads to a noticeable change in the ring-atom
core-level energies. The observed shifts are larger for the oxygen
atoms because, being negatively charged, they are more easily polarizable
than Al and Si. The enhanced electron delocalization among O atoms
upon cation complexation is also manifest in Pauling’s double-bond
nature of the bent σ-bonding MO between nonadjacent oxygen centers
in O-based ring structures
Understanding the Reorientational Dynamics of Solid-State MBH<sub>4</sub> (M = Li–Cs)
The reorientational dynamics of crystalline
MBH<sub>4</sub> (M
= Li–Cs) have been characterized with the interacting quantum
atom theory. This interpretive approach enables an atomistic deciphering
of the energetic features involved in BH<sub>4</sub><sup>–</sup> reorientation using easily
graspable chemical terms. It reveals a complex construction of the
activation energy that extends beyond interatomic distances and chemical
interactions. BH<sub>4</sub><sup>–</sup> reorientations are in LiBH<sub>4</sub> and NaBH<sub>4</sub> regulated by their interaction with the nearest metal cation;
however, higher metal electronic polarizability and more covalent
M···H interactions shift the source of destabilization
to internal deformations in the heavier systems. Underlying electrostatic
contributions cease abruptly at CsBH<sub>4</sub>, triggering a departure
in the otherwise monotonically increasing activation energy. Such
knowledge concurs to the fundamental understanding and advancement
of energy solutions in the field of hydrogen storage and solid-state
batteries
Revealing Electron Delocalization through the Source Function
The source function (SF) introduced in late 90s by Bader and Gatti quantifies the <i>influence</i> of each atom in a system in determining the amount of electron density at a given point, regardless of the atom’s remote or close location with respect to the point. The SF may thus be attractive for studying directly in the real space somewhat elusive molecular properties, such as “electron conjugation” and “aromaticity”, that lack rigorous definitions as they are not directly associated to quantum-mechanical observables. In this work, the results of a preliminary test aimed at understanding whether the SF descriptor is capable to reveal electron delocalization effects are corroborated by further examination of the previously investigated benzene, 1,3-cyclohexadiene, and cyclohexene series and by extending the analysis to some benchmark organic systems with different unsaturated bond patterns. The SF can actually reveal, order, and quantify π-electron delocalization effects for formal double, single conjugated, and allylic bonds, in terms of the influence of distant atoms on the electron density at given bond critical points. In polycyclic aromatic hydrocarbons, the SF neatly reveals the mutual influence of the benzenoid subunits. In naphthalene it provides a rationale for the changes observed in the local aromatic character of one ring when the other is partially hydrogenated. The SF analysis describes instead biphenyl as made up by two weakly interacting benzene rings, only slightly perturbed by the combination of mutual steric and electronic effects. Eventually, a new SF-based indicator of local aromaticity is introduced, which shows excellent correlation with the aromatic index developed by Matta and Hernández-Trujillo, based on the delocalization indices. At variance with this latter and other commonly employed quantum-mechanical (local) aromaticity descriptors, the SF-based indicator does not require the knowledge of the pair density, nor the system wave function, being therefore promising for applications to experimentally derived charge density distributions
A Theoretical Study on the Rotational Motion and Interactions in the Disordered Phase of MBH<sub>4</sub> (M = Li, Na, K, Rb, Cs)
The rotational motion in the high-temperature disordered
phase
of MBH<sub>4</sub> (M = Li, Na, K, Rb, Cs) is investigated utilizing
two complementary theoretical approaches. The first one consists of
high-level periodic DFT calculations which systematically consider
several instantaneous representations of the structural disorder.
The second approach is based on a series of in vacuo calculations
on molecular complexes suitably extracted from the crystal and chosen
as to possibly disentangle the energetic factors leading to the observed
rotational barriers. The results of the first part demonstrate that
the motion of the BH<sub>4</sub><sup>–</sup> anion is dominated
by 90° reorientations around the 4-fold symmetry axes of the
cubic crystal, and depending on the instantaneous structural disorder
activation energies are found to be between 0.00 and 0.31 eV for LiBH<sub>4</sub>, 0.05 and 0.26 eV for NaBH<sub>4</sub>, 0.16 and 0.27 eV
for KBH<sub>4</sub>, 0.22 and 0.31 eV for RbBH<sub>4</sub>, and 0.21
and 0.32 eV for CsBH<sub>4</sub>. The increasing rotational barriers
as well as the movement of the transition state from 7° to 44°
observed along the series of alkaline metals, M = Li–Rb, appear
to be simply accounted for by an analysis of the energy profiles for
the <i>C</i><sub>2</sub> rotation of a BH<sub>4</sub><sup>–</sup> group in M<sup>+</sup>–BH<sub>4</sub><sup>–</sup> and BH<sub>4</sub><sup>–</sup>–BH<sub>4</sub><sup>–</sup> in vacuo complexes. The energy gained from the introduction
of disorder shows a trend opposite to that of the rotational barriers
as it decreases along the Li–Rb series. Similar considerations
apply to the <i>C</i><sub>3</sub> rotational motion of the
BH<sub>4</sub><sup>–</sup> anion, which likewise has been studied
in the crystal and in the in vacuo molecular complexes. CsBH<sub>4</sub> deviates from the systematic trends observed for LiBH<sub>4</sub>–RbBH<sub>4</sub>. Depending on the structural starting point
of the rotation, its <i>C</i><sub>2</sub> rotational barriers
are found to be slightly higher or slightly lower than for RbBH<sub>4</sub>, whereas its energy gain due to the introduction of disorder
is found to be positioned between that of KBH<sub>4</sub> and RbBH<sub>4</sub>. The <i>C</i><sub>3</sub> rotational barriers of
CsBH<sub>4</sub> are instead significantly smaller compared to those
of RbBH<sub>4</sub> and even marginally below those of KBH<sub>4</sub>
Intermolecular Recognition of the Antimalarial Drug Chloroquine: A Quantum Theory of Atoms in Molecules–Density Functional Theory Investigation of the Hydrated Dihydrogen Phosphate Salt from the 103 K X‑ray Structure
The relevant noncovalent interaction
patterns responsible for intermolecular
recognition of the antiplasmodial chloroquine (CQ) in its bioactive
diprotonated form, CQH<sub>2</sub><sup>2+</sup>, are investigated.
Chloroquine dihydrogen phosphate hydrated salt (<i>P</i>2<sub>1</sub>/<i>c</i>) was crystallized by gel diffusion.
A high-resolution single-crystal X-ray diffraction experiment was
performed at 103(2) K, and a density functional theory model for the
in-crystal electron density was derived, allowing the estimation of
the interaction energies in relevant molecular pairs. H<sub>2</sub>PO<sub>4</sub><sup>–</sup> ions form infinite chains parallel
to the monoclinic axis, setting up strong NH···O charge-assisted
hydrogen bonds (CAHBs) with CQH<sub>2</sub><sup>2+</sup>. Couples
of facing protonated quinoline rings are packed in a π···π
stacked arrangement, whose contribution to the interaction energy
is very low in the crystal and completely overwhelmed by Coulomb repulsion
between positive aromatic rings. This questions the ability of CQ
in setting up similar stacking interactions with the positively charged
Fe-protoporphyrin moiety of the heme substrate in solution. When the
heme/CQ adduct incorporates a Fe–N coordinative bond, stronger
π···π interactions are instead established
due to the lacking of net electrostatic repulsions. Yet, CAHBs among
the protonated tertiary amine of CQ and the propionate group of heme
still provide the leading stabilizing effect. Implications on possible
modifications/improvements of the CQ pharmacophore are discussed