7 research outputs found

    Multiorgan MRI findings after hospitalisation with COVID-19 in the UK (C-MORE): a prospective, multicentre, observational cohort study

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    Introduction: The multiorgan impact of moderate to severe coronavirus infections in the post-acute phase is still poorly understood. We aimed to evaluate the excess burden of multiorgan abnormalities after hospitalisation with COVID-19, evaluate their determinants, and explore associations with patient-related outcome measures. Methods: In a prospective, UK-wide, multicentre MRI follow-up study (C-MORE), adults (aged ≥18 years) discharged from hospital following COVID-19 who were included in Tier 2 of the Post-hospitalisation COVID-19 study (PHOSP-COVID) and contemporary controls with no evidence of previous COVID-19 (SARS-CoV-2 nucleocapsid antibody negative) underwent multiorgan MRI (lungs, heart, brain, liver, and kidneys) with quantitative and qualitative assessment of images and clinical adjudication when relevant. Individuals with end-stage renal failure or contraindications to MRI were excluded. Participants also underwent detailed recording of symptoms, and physiological and biochemical tests. The primary outcome was the excess burden of multiorgan abnormalities (two or more organs) relative to controls, with further adjustments for potential confounders. The C-MORE study is ongoing and is registered with ClinicalTrials.gov, NCT04510025. Findings: Of 2710 participants in Tier 2 of PHOSP-COVID, 531 were recruited across 13 UK-wide C-MORE sites. After exclusions, 259 C-MORE patients (mean age 57 years [SD 12]; 158 [61%] male and 101 [39%] female) who were discharged from hospital with PCR-confirmed or clinically diagnosed COVID-19 between March 1, 2020, and Nov 1, 2021, and 52 non-COVID-19 controls from the community (mean age 49 years [SD 14]; 30 [58%] male and 22 [42%] female) were included in the analysis. Patients were assessed at a median of 5·0 months (IQR 4·2–6·3) after hospital discharge. Compared with non-COVID-19 controls, patients were older, living with more obesity, and had more comorbidities. Multiorgan abnormalities on MRI were more frequent in patients than in controls (157 [61%] of 259 vs 14 [27%] of 52; p<0·0001) and independently associated with COVID-19 status (odds ratio [OR] 2·9 [95% CI 1·5–5·8]; padjusted=0·0023) after adjusting for relevant confounders. Compared with controls, patients were more likely to have MRI evidence of lung abnormalities (p=0·0001; parenchymal abnormalities), brain abnormalities (p<0·0001; more white matter hyperintensities and regional brain volume reduction), and kidney abnormalities (p=0·014; lower medullary T1 and loss of corticomedullary differentiation), whereas cardiac and liver MRI abnormalities were similar between patients and controls. Patients with multiorgan abnormalities were older (difference in mean age 7 years [95% CI 4–10]; mean age of 59·8 years [SD 11·7] with multiorgan abnormalities vs mean age of 52·8 years [11·9] without multiorgan abnormalities; p<0·0001), more likely to have three or more comorbidities (OR 2·47 [1·32–4·82]; padjusted=0·0059), and more likely to have a more severe acute infection (acute CRP >5mg/L, OR 3·55 [1·23–11·88]; padjusted=0·025) than those without multiorgan abnormalities. Presence of lung MRI abnormalities was associated with a two-fold higher risk of chest tightness, and multiorgan MRI abnormalities were associated with severe and very severe persistent physical and mental health impairment (PHOSP-COVID symptom clusters) after hospitalisation. Interpretation: After hospitalisation for COVID-19, people are at risk of multiorgan abnormalities in the medium term. Our findings emphasise the need for proactive multidisciplinary care pathways, with the potential for imaging to guide surveillance frequency and therapeutic stratification

    RNA Folding and Catalysis Mediated by Iron (II)

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    <div><p>Mg<sup>2+</sup> shares a distinctive relationship with RNA, playing important and specific roles in the folding and function of essentially all large RNAs. Here we use theory and experiment to evaluate Fe<sup>2+</sup> in the absence of free oxygen as a replacement for Mg<sup>2+</sup> in RNA folding and catalysis. We describe both quantum mechanical calculations and experiments that suggest that the roles of Mg<sup>2+</sup> in RNA folding and function can indeed be served by Fe<sup>2+</sup>. The results of quantum mechanical calculations show that the geometry of coordination of Fe<sup>2+</sup> by RNA phosphates is similar to that of Mg<sup>2+</sup>. Chemical footprinting experiments suggest that the conformation of the <em>Tetrahymena thermophila</em> Group I intron P4–P6 domain RNA is conserved between complexes with Fe<sup>2+</sup> or Mg<sup>2+</sup>. The catalytic activities of both the L1 ribozyme ligase, obtained previously by <em>in vitro</em> selection in the presence of Mg<sup>2+</sup>, and the hammerhead ribozyme are enhanced in the presence of Fe<sup>2+</sup> compared to Mg<sup>2+</sup>. All chemical footprinting and ribozyme assays in the presence of Fe<sup>2+</sup> were performed under anaerobic conditions. The primary motivation of this work is to understand RNA in plausible early earth conditions. Life originated during the early Archean Eon, characterized by a non-oxidative atmosphere and abundant soluble Fe<sup>2+</sup>. The combined biochemical and paleogeological data are consistent with a role for Fe<sup>2+</sup> in an RNA World. RNA and Fe<sup>2+</sup> could, in principle, support an array of RNA structures and catalytic functions more diverse than RNA with Mg<sup>2+</sup> alone.</p> </div

    Conformations of RNA-Mg<sup>2+</sup> and RNA-Fe<sup>2+</sup> clamps are nearly identical.

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    <p>A) RNA-Mg<sup>2+</sup> clamp from the L1 ribozyme ligase (PDB 2OIU). B) RNA-Mg<sup>2+</sup> clamp optimized by high level QM calculations. C) An optimized RNA-Fe<sup>2+</sup> clamp. Each cation (Mg<sup>2+</sup> or Fe<sup>2+</sup>) is hexacoordinate. Mg<sup>2+</sup> is shown as a yellow sphere and Fe<sup>2+</sup> is shown as a green sphere. Water molecules are omitted from the images for clarity. Distances are in Ã….</p

    Addition of Mg<sup>2+</sup> or Fe<sup>2+</sup> causes the same changes in the SHAPE reactivity of the P4–P6 domain of the <i>T. thermophila</i> Group 1 intron.

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    <p>A) Shape profile in presence of 250 mM NaCl and no divalent cations. B) The addition of Mg<sup>2+</sup> increases the reactivity at the sites indicated with the asterisks and decreases reactivity at other sites. This reaction contains 2.5 mM Mg<sup>2+</sup> and 250 mM NaCl. C) The addition of Fe<sup>2+</sup> causes the same changes in SHAPE reactivity as Mg<sup>2+</sup>. This reaction contains 2.5 mM Fe<sup>2+</sup> and 250 mM NaCl.</p

    Ribozyme activity is enhanced by Fe<sup>2+</sup> compared to Mg<sup>2+</sup>.

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    <p>A) L1 ribozyme ligase activity is enhanced in Fe<sup>2+</sup> compared to Mg<sup>2+</sup>. Ligase reactions were performed under anaerobic conditions at room temperature and 250 mM Na<sup>+</sup> in 100 µM [Fe<sup>2+</sup>] or 100 µM [Mg<sup>2+</sup>]. The reaction components were first annealed in 50 mM HEPES, pH 8.0, 200 mM sodium acetate by incubating at 90°C for 3 min and cooling to room temperature over 30 min. The ligation reaction was initiated by adding the appropriate cation salt. The Na<sup>+</sup> only reaction gave no product. Reaction progress was monitored by gel electrophoresis. B) Hammerhead ribozyme activity is enhanced in Fe<sup>2+</sup> compared to Mg<sup>2+</sup>. Hammerhead ribozyme cleavage reactions were performed under anaerobic conditions at room temperature in 50 mM HEPES, pH 7.5 and 25 µM [Fe<sup>2+</sup>] or 25 µM [Mg<sup>2+</sup>]. Substrate and ribozyme RNA strands were first annealed in 50 mM HEPES buffer by incubating at 90°C for 2 min and cooling to room temperature over 30 min. Cleavage reactions were initiated by addition of FeCl<sub>2</sub> or MgCl<sub>2</sub> from stock solutions. Reactions were monitored by both gel electrophoresis and capillary electrophoresis, which gave similar results.</p
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