The Folding Deuteron Optical Model Potentials

For 52 target nuclei with deuteron as projectile, we calculate the reaction cross sections and elastic scattering angular distributions, as well as the $\chi^2$ values for 11 kinds of deuteron optical model potentials: our global deuteron optical potentials and 10 folding optical potentials calculated with 2 phenomenological global nucleon optical potentials given by Koning \textit{et al}(KD) and by Varner\textit{et al}(CH89), and 8 microscopic nucleon optical potentials with the generalized Skyrme force parameters(GS1-6) and modified Skyrme force parameters(SKa, SKb). We find that for constructing the folding deuteron optical potential, both SKa and SKb are the best Skyrme force parameters of the microscopic nucleon optical potential proposed by Q. Shen \textit{et al}.Comment: 23 pages, 6 figure

RESEARCH ON VEGETATION DYNAMIC CHANGE SIMULATION BASED ON SPATIAL DATA MINING OF ANN-CA MODEL USING TIME SERIES OF REMOTE SENSING IMAGES

Abstract: Dynamic change of vegetation has become a very sensitive problem in China due to climate variability and human's disturbances in the Yellow river basin. Dynamic simulation and forecast of vegetation are regarded as an effective measure to decision support for local government. This paper presents a new method to support the local government's effort in ecological protection. In integrates cellular automata (CA) -artificial neural network (ANN) model with Geographical information system (GIS) and remote sensing. The proposed method includes three major steps: (1) to extract control factors; (2) to integrate CA and ANN models; (3) to simulate the selected area using CA-ANN model. The results indicted that the integrated approach can rapidly find condition of future vegetation cover that satisfy requirement of local relative department. It has demonstrated that the proposed method can provide valuable decision support for local government. the result indicts that NDVI of the vegetation has an increasing trend and characteristics of distribution concentration trend, but the change rate is become lower from th

Influence of ultrasound-assisted alkali treatment on the structural properties and functionalities of rice protein

peer-reviewedThe poor solubility of rice protein (RP) limits its applications in food industry. In this study, the effects of ultrasound-assisted alkali (UAA) treatment on the solubility, structure and functional properties of RP were investigated. Using UAA treatment, the solubility of RP increased with increasing alkali concentration, reaching a maximum value of 19.79 mg/mL at an alkali concentration of 0.08 M. The solubility was improved by 230-fold compared to un-treated samples. In addition, a reduction in particle size and degradation of the protein subunit were observed. UAA seemed to unfold the protein internal structural conformation and expose buried functional groups, which are linked to good emulsifying properties and foaming properties. A decrease in zeta potential was also observed after UAA treatment, which could be the reason for the decreased stability of the emulsion. UAA treatment modified the protein structure and significantly improved solubility

High affinity binding of H3K14ac through collaboration of bromodomains 2, 4 and 5 is critical for the molecular and tumor suppressor functions of PBRM1.

Polybromo-1 (PBRM1) is an important tumor suppressor in kidney cancer. It contains six tandem bromodomains (BDs), which are specialized structures that recognize acetyl-lysine residues. While BD2 has been found to bind acetylated histone H3 lysine 14 (H3K14ac), it is not known whether other BDs collaborate with BD2 to generate strong binding to H3K14ac, and the importance of H3K14ac recognition for the molecular and tumor suppressor function of PBRM1 is also unknown. We discovered that full-length PBRM1, but not its individual BDs, strongly binds H3K14ac. BDs 2, 4, and 5 were found to collaborate to facilitate strong binding to H3K14ac. Quantitative measurement of the interactions between purified BD proteins and H3K14ac or nonacetylated peptides confirmed the tight and specific association of the former. Interestingly, while the structural integrity of BD4 was found to be required for H3K14ac recognition, the conserved acetyl-lysine binding site of BD4 was not. Furthermore, simultaneous point mutations in BDs 2, 4, and 5 prevented recognition of H3K14ac, altered promoter binding and gene expression, and caused PBRM1 to relocalize to the cytoplasm. In contrast, tumor-derived point mutations in BD2 alone lowered PBRM1\u27s affinity to H3K14ac and also disrupted promoter binding and gene expression without altering cellular localization. Finally, overexpression of PBRM1 variants containing point mutations in BDs 2, 4, and 5 or BD2 alone failed to suppress tumor growth in a xenograft model. Taken together, our study demonstrates that BDs 2, 4, and 5 of PBRM1 collaborate to generate high affinity to H3K14ac and tether PBRM1 to chromatin. Mutations in BD2 alone weaken these interactions, and this is sufficient to abolish its molecular and tumor suppressor functions

Silencing of c-Ski augments TGF-b1-induced epithelial-mesenchymal transition in cardiomyocyte H9C2 cells

Background: The shRNA lentiviral vector was constructed to silence c-Ski expression in cardiac mus-  cle cells, with the aim of exploring the role of c-Ski in transforming growth factor b1 (TGF-b1)-induced epithelial-mesenchymal transitions (EMT) in H9C2 cells. Methods: Real-time polymerase chain reaction (RT-PCR) and western blot were used to detect c-Ski ex- pression at protein and messenger ribonucleic acid (mRNA) levels in 5 different cell lines. Then, lentiviral vector was constructed to silence or overexpress c-Ski in H9C2 cells. MTT and/or soft agar assay and tran- swell assay were used to detect cell proliferation and migration, respectively. The expression levels of c-Ski under different concentrations of TGF-b1 stimulation were detected by RT-qPCR and immunocytochemi- cal analysis. In the presence or absence of TGF-b1 stimulation, the proteins’ expression levels of a-SMA, FN and E-cadherin, which are closely correlated with the process of EMT, were measured by western blot after c-Ski silencing or overexpression. Meanwhile, the effect of c-Ski on Samd3 phosphorylation with TGF-b1 stimulation was investigated.  Results: There is a high expression of c-Ski at protein and mRNA levels in H9C2 cell line, which first demonstrated the presence of c-Ski expression in H9C2 cells. Overexpression of c-Ski significantly increased H9C2 cell proliferation. The ability of c-Ski gene silencing to suppress cell proliferation was gradually enhanced, and inhibition efficiency was the highest after 6 to 7 d of transfection. Moreover, H9C2 cells with c-Ski knockdown gained significantly aggressive invasive potential when compared with the control group. TGF-b1 stimulation could dose-independently reduce c-Ski expression in H9C2 cells and lead to obvious down-regulated expression of E-cadherin. Interestingly, c-Ski could restore E-cadherin expression while suppressing a-SMA and/or FN expression stimulated by TGF-b1. How- ever, shRNA-induced c-Ski knockdown aggravated only the TGF-b1-induced EMT. Moreover, c-Ski- -shRNA also promoted the phosphorylation of Samd3 induced by TGF-b1.  Conclusions: c-Ski expression in cardiac muscle cells could be down-regulated by TGF-b1. Silencing of c-Ski gene was accompanied by down-regulation of E-cadherin, up-regulation of a-SMA and/or FN and Smad3 phosphorylation induced by TGF-b1, promoting EMT process. Therefore, c-Ski may be closely associated with TGF-b1-induced EMT and play an important role in cardiac fibrosis develop- ment and progression.

Mixed Boundary-Value Analysis of Rocking Vibrations of an Elastic Strip Foundation on Elastic Soil with Saturated Substrata

The dynamic response of an elastic strip foundation lying on elastic soil with saturated substrata is greatly affected by pore pressure induced by a rocking moment. In this paper, we explore the mixed boundary-value problem of the rocking vibration of an elastic strip foundation on elastic soil with saturated substrata via Biot dynamic equations. First, the wave equations concerning both the single-phase elastic layer and the saturated half-space are solved using a Fourier integral transform technique. The dual integral equations of the rocking vibration of an elastic strip foundation are established according to the mixed boundary conditions. Finally, the relationship of the dynamic compliance coefficient with the dimensionless frequency is obtained by applying Simpson’s rule to conduct numerical calculation. We also analyse the influences of the elastic layer’s thickness and elastic characteristic parameters of the foundation on the rocking vibration

Multiple tumor suppressors regulate a HIF-dependent negative feedback loop via ISGF3 in human clear cell renal cancer.

Whereas VHL inactivation is a primary event in clear cell renal cell carcinoma (ccRCC), the precise mechanism(s) of how this interacts with the secondary mutations in tumor suppressor genes, including PBRM1, KDM5C/JARID1C, SETD2, and/or BAP1, remains unclear. Gene expression analyses reveal that VHL, PBRM1, or KDM5C share a common regulation of interferon response expression signature. Loss of HIF2α, PBRM1, or KDM5C in VHL-/-cells reduces the expression of interferon stimulated gene factor 3 (ISGF3), a transcription factor that regulates the interferon signature. Moreover, loss of SETD2 or BAP1 also reduces the ISGF3 level. Finally, ISGF3 is strongly tumor-suppressive in a xenograft model as its loss significantly enhances tumor growth. Conversely, reactivation of ISGF3 retards tumor growth by PBRM1-deficient ccRCC cells. Thus after VHL inactivation, HIF induces ISGF3, which is reversed by the loss of secondary tumor suppressors, suggesting that this is a key negative feedback loop in ccRCC. © 2018, Liao et al

Vizard: A Metadata-hiding Data Analytic System with End-to-End Policy Controls

Owner-centric control is a widely adopted method for easing owners\u27 concerns over data abuses and motivating them to share their data out to gain collective knowledge. However, while many control enforcement techniques have been proposed, privacy threats due to the metadata leakage therein are largely neglected in existing works. Unfortunately, a sophisticated attacker can infer very sensitive information based on either owners\u27 data control policies or their analytic task participation histories (e.g., participating in a mental illness or cancer study can reveal their health conditions). To address this problem, we introduce $\textsf{Vizard}$, a metadata-hiding analytic system that enables privacy-hardened and enforceable control for owners. $\textsf{Vizard}$ is built with a tailored suite of lightweight cryptographic tools and designs that help us efficiently handle analytic queries over encrypted data streams coming in real-time (like heart rates). We propose extension designs to further enable advanced owner-centric controls (with AND, OR, NOT operators) and provide owners with release control to additionally regulate how the result should be protected before deliveries. We develop a prototype of $\textsf{Vizard}$ that is interfaced with Apache Kafka, and the evaluation results demonstrate the practicality of $\textsf{Vizard}$ for large-scale and metadata-hiding analytics over data streams

Assessment of the feasibility and coverage of a modified universal hearing screening protocol for use with newborn babies of migrant workers in Beijing

BACKGROUND: Although migrant workers account for the majority of newborns in Beijing, their children are less likely to undergo appropriate universal newborn hearing screening/rescreening (UNHS) than newborns of local non-migrant residents. We hypothesised that this was at least in part due to the inadequacy of the UNHS protocol currently employed for newborn babies, and therefore aimed to modify the protocol to specifically reflect the needs of the migrant population. METHODS: A total of 10,983 healthy babies born to migrant mothers between January 2007 and December 2009 at a Beijing public hospital were investigated for hearing abnormalities according to a modified UNHS protocol. This incorporated two additional/optional otoacoustic emissions (OAE) tests at 24–48 hours and 2 months after birth. Infants not passing a screening test were referred to the next test, until any hearing loss was confirmed by the auditory brainstem response (ABR) test. RESULTS: A total of 98.91% (10983/11104) of all newborn children underwent the initial OAE test, of which 27.22% (2990/10983) failed the test. 1712 of the failed babies underwent the second inpatient OAE test, with739 failing again; thus significantly decreasing the overall positive rate for abnormal hearing from 27.22% to 18.36% ([2990–973 /10983)]; p = 0). Overall, 1147(56.87%) babies underwent the outpatient OAE test again after1-month, of whom 228 failed and were referred for the second outpatient OAE test (i.e. 2.08% (228/10983) referral rate at 1month of age). 141 of these infants underwent the referral test, of whom 103 (73.05%) tested positive again and were referred for a final ABR test for hearing loss (i.e. final referral rate of 1.73% ([228-38/10983] at 2 months of age). Only 54 infants attended the ABR test and 35 (0.32% of the original cohort tested) were diagnosed with abnormal hearing. CONCLUSIONS: Our study shows that it is feasible and practical to achieve high coverage rates for screening hearing loss and decrease the referral rates in newborn babies of migrant workers, using a modification of the currently employed UNHS protocol