Competitive ability of canola hybrids resistant and susceptible to herbicides.

ABSTRACT - This work aimed to compare the competitive ability of canola hybrids susceptible (conventional) or resistant to triazine or imidazolinone group herbicides, with turnip. The experiments were conducted in greenhouse, in a completely randomized design, with four replicates. The hybrids Hyola 571CL (resistant to imidazolinone), Hyola 555TT (resistant to triazine), and Hyola 61 (conventional) were used. The treatments consisted of ratios (100:0; 75:25; 50:50; 25:75; 0:100%) of canola and turnip plants. The evaluation was performed 44 days after emergence, determining the leaf área (AF), dry matter of aerial part (MSPA), and stature (EST) of the plants. The competitiveness analysis was performed through diagrams and interpretation of the competitiveness indexes. For the canola hybrids, the competition occurred by the same mean resources. There was damage to the crop growth in competition with the turnip. The turnip was not benefited only when in competition with Hyola 571CL hybrid, for the EST variable, and with the conventional canola, for the variable AF. There was significance for the competitiveness indexes, demonstrating that turnip is more competitive then the crop. Greater AF, MSPA, and EST occurred for canola plants in the smallest proportions of turnip and, for turnip plants, in the largest proportions of canola. The ability to compete with turnip is similar among hybrids, with injury to the crop and benefit to the weed, when competing. Interspecific competition is more damaging to canola hybrids; and intraspecific competition is more damaging to turnip. Keywords: Brassica napus L., Raphanus sativus L., interference, competitiveness. RESUMO - Este trabalho objetivou comparar a habilidade competitiva de híbridos de canola, suscetível (convencional) ou com resistência aos herbicidas do grupo das triazinas ou das imidazolinonas, com o nabo. Os experimentos foram conduzidos em casa de vegetação, no delineamento inteiramente casualizado com quatro repetições. Foram utilizados os híbridos Hyola 571CL (resistente a imidazolinonas), Hyola 555TT (resistente a triazinas) e Hyola 61 (convencional). Os tratamentos consistiram de proporções (100:0; 75:25; 50:50; 25:75; 0:100%) de plantas de canola e do nabo. A avaliação foi realizada aos 44 dias após a emergência, determinando-se a área foliar (AF), matéria seca de parte aérea (MSPA) e estatura (EST) de plantas. A análise da competitividade foi feita por meio de diagramas e interpretação dos índices de competitividade. Para os híbridos de canola, a competição ocorreu pelos mesmos recursos do meio. Houve prejuízo ao crescimento da cultura em competição com o nabo. O nabo somente não foi beneficiado quando em competição com o híbrido Hyola 571CL, para a variável EST, e com a canola convencional, para a variável AF. Houve significância para os índices de competitividade, demonstrando que o nabo é mais competitivo que a cultura. Maior AF, MSPA e EST ocorreu para plantas de canola nas menores proporções de nabo e, para plantas de nabo, nas maiores proporções de canola. A habilidade em competir com o nabo é semelhante entre os híbridos, havendo prejuízo à cultura e benefício à planta daninha, quando em competição. A competição interespecífica é mais prejudicial para os híbridos de canola, e a competição intraespecífica, para o nabo. Palavras-chave: Brassica napus L., Raphanus sativus L., interferência, competitividade

Gene expression related to oxidative stress induced by herbicides in rice.

Herbicides are stressors that can have negative effects on plants. In Oryza sativa (L.), differential gene expression may be evalu-ated through real-time reverse transcription quantitative poly-merase chain reaction (RT-qPCR). The aim of this study was to evaluate the stability of candidate reference genes and to quan-tify the relative expression of oxidative stress genes at different times (12, 24, 48, and 96 hours after treatment [HAT]) with penoxsulam, cyhalofop-butyl, and bentazon herbicides. Norm-Finder, BestKeeper, and GeNorm software and the compara-tive ∆Ct method were used to assess expression stability and to determine the RT-qPCR threshold values of the candidate reference genes. The UBQ5 gene was the most stable among the reference genes analyzed. The gene expression results showed upregulation of OsCAT and OsMnSOD1 genes at all times after herbicide application. The OsA PX 2 and OsGST3 genes showed increased gene expression at 12 and 96 HAT for all herbicides. The OsHO -1 gene had the most significant expression changes, with maximum expression levels at 24 HAT with bentazon and at 96 HAT with penoxsulam and cyhalofop-butyl. Overall, antioxidant system gene expression increased after the applica-tion of bentazon, penoxsulam, and cyhalofop-butyl in ric

Expression of antioxidant genes and photosynthetic apparatus in the soybean crop in competition with Italian ryegrass biotypes.

Crop-weed competition induces stress in plants causing physiological changes which can be evaluated using the RT-qPCR technique. The aim of this study was to evaluate the stability of candidate reference genes and measure the relative gene expression of antioxidant enzymes and components of the photosynthetic apparatus in soybean in competition with glyphosate-susceptible and resistant Italian ryegrass (Lolium multiflorum Lam.). The experiment was carried out in a greenhouse using replacement series between soybean and Italian ryegrass biotypes. In this study, candidate reference genes were evaluated for use as controls in RT-qPCR to quantify gene expression. An evaluation was made of genes that encode catalase, ascorbate peroxidase, superoxide dismutase, chlorophyll a/b, phytochrome A and cytochrome P450 at 50 days after emergence of the soybean. The SKIP and GAPDH genes were the most stable for soybean and Italian ryegrass, respectively. The soybean subjected to the interspecific competition with the glyphosate-resistant Italian ryegrass biotype showed an increase in superoxide dismutase gene expression. The catalase and cytochrome P450 genes were up-regulated in the susceptible biotype while the other genes were down-regulated. However, the soybean crop under interspecific competition with glyphosate-resistant biotye showed as up-regulated for all the genes evaluated. For the photosynthetic apparatus, cytochrome P450 gene was up-regulated under intraspecific competition on both Italian ryegrass biotypes, while the phytochrome A was up-regulated only in the resistant biotype. Thus, the increase in genes investigated represents a potential tool for the genetic improvement of plants to enhance their competitive capacity

Caracterização e manejo de azevém (Lolium multiflorum L.) resistente a herbicidas em áreas agrícolas.

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Pre-harvest herbicide application reduces the Italian ryegrass seed viability.

Italian ryegrass (Lolium multiflorum Lam.) is a troublesome weed found in temperate agricultural fields, wherein the future infestations depend on the soil seed bank. The aim of this research was to evaluate Italian ryegrass seed viability subjected to herbicide application in different phenological stages of development. Experiments were carried out in a completely randomized experimental design with four repetitions. Paraquat, ammonium-glufosinate, iodosulfuron-methyl and clethodim herbicides were applied in three development stages (pre-spike, anthesis, and grain filling) and compared to the control. The effects were evaluated by percentage of control at seven, 14, and 28 days after application (DAA), seeds per plant, 1000 seeds weight, and percentage of germination, abnormal seedlings, dead seeds, viable and non-viable dormant seeds. Control was greater than 97% at 28 DAA, with a decrease of more 90% for seed per plant, and strong reduction of 1000 seeds weight for the herbicides applied up to the anthesis stage. At the grain filling stage, clethodim reduced seed production by 18% and 1000-seeds weight by 36% compared to the control. Ammonium-glufosinate and paraquat herbicides applied up to the anthesis stage reduced seed viability by more than 98%. Overall, herbicide application reduces seed production, seed weight and viability, especially when applied before the grain filling stage. Highlighted Conclusions 1. Herbicide application up to the anthesis developmental stages reduces seed production, 1000 seeds weight, and seed viability. 2. Paraquat was the best herbicide to reduce seed production per plant, 1000-seeds weight and, viability of Italian ryegrass seeds, regardless of development stages. 3. Reducing future infestations of Italian ryegrass in cropping systems depends on herbicide application before the grain filling

Transcriptome analysis identifies candidate target genes involved in glyphosate-resistance mechanism in lolium multiflorum.

Italian ryegrass (Lolium multiflorum; LOLMU) is one of the most troublesome weeds in temperate regions in the world. This weed species interfere with wheat, corn, rye, and oat, causing significant crop yield losses. This species has evolved glyphosate resistance, making it difcult to control. The mechanisms of glyphosate resistance are still unknown, and an understanding thereof will favor the development of new strategies of management. The present study is the first transcriptome study in LOLMU using glyphosate-resistant and -sensitive biotypes, aiming to identify and to provide a list of the candidate target genes related to glyphosate resistance mechanism. The transcriptome was assembled de novo, producing 87,433 contigs with an N50 of 740 bp and an average length of 575 bp. There were 92 and 54 up- and down-regulated genes, respectively, in the resistant biotype, while a total of 1683 were diferentially expressed in the sensitive biotype in response to glyphosate treatment. We selected 14 highly induced genes and seven with repressed expression in the resistant biotype in response to glyphosate. Of these genes, a significant proportion were related to the plasma membrane, indicating that there is a barrier making it difcult for glyphosate to enter the cell

Rules extraction from neural networks applied to the prediction and recognition of prokaryotic promoters

Promoters are DNA sequences located upstream of the gene region and play a central role in gene expression. Computational techniques show good accuracy in gene prediction but are less successful in predicting promoters, primarily because of the high number of false positives that reflect characteristics of the promoter sequences. Many machine learning methods have been used to address this issue. Neural Networks (NN) have been successfully used in this field because of their ability to recognize imprecise and incomplete patterns characteristic of promoter sequences. In this paper, NN was used to predict and recognize promoter sequences in two data sets: (i) one based on nucleotide sequence information and (ii) another based on stability sequence information. The accuracy was approximately 80% for simulation (i) and 68% for simulation (ii). In the rules extracted, biological consensus motifs were important parts of the NN learning process in both simulations