Survival analysis of piglet pre-weaning mortality

Survival analysis methodology was applied in order to analyse sources of variation of preweaning survival time and to estimate variance components using data from a crossbred piglets population. A frailty sire model was used with the litter effect treated as an additional random source of variation. All the variables considered had a significant effect on survivability: sex, cross-fostering, parity of the nurse-sow and litter size. The variance estimates of sire and litter were closed to 0.08 and 2 respectively and the heritability of pre-weaning survival was 0.03

On-site visible-near IR prediction of iodine number and fatty acid composition of subcutaneous fat of raw hams as phenotypes for a heavy pig breeding program.

Abstract The quality of subcutaneous fat of raw hams is a trait of interest in selective breeding programs for pig lines used in dry-cured ham production, and rapid, non-invasive methods for its assessment are available. However, the efficacy of such methods to provide indicator traits for breeding programs needs to be proven. The study investigated the accuracy of on-site visible–near IR spectroscopy predictions of iodine number and fatty acid (FA) composition of raw ham subcutaneous fat, and it evaluated their effectiveness as indicator traits of ham fat quality in a pig breeding program. Prediction equations were developed using visible–near IR spectra acquired at the slaughterhouse from five sites in subcutaneous fat of raw hams of 1025 crossbred pigs. Pigs were raised, under standardized rearing and feeding conditions, in the sib-testing program of the Goland C21 boar line and slaughtered at nine months of age and average body weight of 166 ± 15 kg. Accuracy was generally relatively poor, but R2 in external validation was > 0.7 for iodine number and concentration of C18:2n-6, polyunsaturated FAs and omega-6 FAs. To assess the effectiveness of the on-site predictions as indicator traits in a breeding program, (co)variance components of the measured traits (OBS) and of their predictions using in-lab (in-lab-PR) or on-site (on-site-PR) spectrometers were estimated. Available records for OBS were 6814 and 2048, for iodine number and FA composition, respectively. Predictions using in-lab were available for pigs slaughtered between 2006 and 2014, for a total of 10 153 records. Predictions using on-site were obtained from spectra collected since 2011, for a total of 10 296 records. The estimated heritabilities for the investigated traits ranged from 0.34 to 0.50 and were greater for on-site-PR than for OBS. Genetic correlations between OBS and in-lab-PR were very close to 1.00 for all the investigated traits, whereas those between OBS and on-site-PRED ranged from 0.86 to 0.94. On-site visible-IR predictions are accurate enough to support the use of this technique for large-scale phenotyping of raw ham fat quality, even when dealing with animals of a single genetic line raised in standardized conditions, and may be implemented as indicator traits in breeding programs

Prevalence and genetic parameters for hip dysplasia in Italian population of purebred dogs

This paper aimed to assess the prevalence of hip dysplasia (HD) in some breeds of dogs widely diffused in Italy and to estimate heritability of HD in German Shepherd and Boxer Italian populations. Data consisted of radiographic findings taken on 32,900 dogs (18,665 females and 14,225 males) of 7 breeds (German Shepherd; Boxer; Labrador Retriever; Golden Retriever; Rottweiler; Dobermann; Cane Corso) screened at an age of 17.9 ± 7.0 months. Radiographs of the coxofemoral joints, taken by 478 veterinarians, were scored for HD grade by a single veterinarian panelist according to a grading procedure based on a 5-class linear system (from A, no signs of dysplasia, to E, severe dysplastic hip changes). Logistic regression analysis was used for studying the relationships between selected explanatory variables with the out- come of the diagnosis for HD. Variance components, direct and maternal heritability have been estimated for German Shepherd and Boxer dogs using a REML animal model procedure. Prevalence of HD (hip joint graded C or worse) for the pool of breeds involved approached 22%, with large differences among breeds. In dogs diagnosed as dysplastic, the mild form (grade C) was largely prevalent for all breeds. When compared to the German Shepherd, the Cane Corso exhibit- ed a significantly higher risk, whereas the Dobermann, Labrador and Rottweiler showed a significantly lower risk of being affected by HD. The probability of being diagnosed as dysplastic increased with the increasing of the age of dogs at screening and with the decreasing of experience of x-raying veterinarians. The effect of birth year of dogs on the out- come of the HD diagnosis was significant, but evidenced an inconsistent trend through years. Heritability estimates approached 0.24 and 0.15 for Boxers and German Shepherds, respectively, whereas maternal heritability was close to 0.03 for both breeds. Results from this study demonstrated that HD is fairly prevalent in some breeds of dogs common- ly found in Italy, and its reduction should be a goal in breeding schemes of purebred dogs. Age at screening and expe- rience of the x-raying veterinarians are disturbance factors to be considered in screening programs for HD. Heritability estimates for HD was low, but additive genetic variance seems enough for conjecturing selection programs aimed to decrease hip joints disease. Given the low heritability values, current selection schemes based on phenotypic records seem ineffective, whereas the use of breeding values estimated under BLUP animal model procedures should be recom- mended for gaining genetic progress of Italian dog populations

Relationship between raw ham cathepsin B activity and firmness of dry cured hams

This study aimed to investigate the relationship between cathepsin B activity and muscle firmness of dry cured hams. A total of 988 samples of semimembranosus muscle were collected from raw hams of heavy pigs and cathepsin B activity was determined using fluorimetric method. Raw hams were cured following San Daniele guidelines. Dry-cured hams were deboned and cross-sectioned. On the cross section firmness was measured at three muscular sites (M. semimembranosus, semitendinosus and biceps femoris) using a Hardness Meter MK2. This study did not evidence any significant relationship between cathepsin activity and firmness of dry cured hams

A study on the risk of subaortic and pulmonic stenosis and on genetic aspects of echocardiography measurements in the Italian Boxer dog

Subaortic and pulmonic stenosis are congenital cardiac defects affecting several dog breeds (Jacobs, 1990; Buchanan, 1992; Tidholm, 1997). Subaortic stenosis (SAS) is characterized by a fibrous ring of tissue placed immediately below the aortic valve

Evaluating alternate models to estimate genetic parameters of calving traits in United Kingdom Holstein-Friesian dairy cattle

<p>Abstract</p> <p>Background</p> <p>The focus in dairy cattle breeding is gradually shifting from production to functional traits and genetic parameters of calving traits are estimated more frequently. However, across countries, various statistical models are used to estimate these parameters. This study evaluates different models for calving ease and stillbirth in United Kingdom Holstein-Friesian cattle.</p> <p>Methods</p> <p>Data from first and later parity records were used. Genetic parameters for calving ease, stillbirth and gestation length were estimated using the restricted maximum likelihood method, considering different models i.e. sire (−maternal grandsire), animal, univariate and bivariate models. Gestation length was fitted as a correlated indicator trait and, for all three traits, genetic correlations between first and later parities were estimated. Potential bias in estimates was avoided by acknowledging a possible environmental direct-maternal covariance. The total heritable variance was estimated for each trait to discuss its theoretical importance and practical value. Prediction error variances and accuracies were calculated to compare the models.</p> <p>Results and discussion</p> <p>On average, direct and maternal heritabilities for calving traits were low, except for direct gestation length. Calving ease in first parity had a significant and negative direct-maternal genetic correlation. Gestation length was maternally correlated to stillbirth in first parity and directly correlated to calving ease in later parities. Multi-trait models had a slightly greater predictive ability than univariate models, especially for the lowly heritable traits. The computation time needed for sire (−maternal grandsire) models was much smaller than for animal models with only small differences in accuracy. The sire (−maternal grandsire) model was robust when additional genetic components were estimated, while the equivalent animal model had difficulties reaching convergence.</p> <p>Conclusions</p> <p>For the evaluation of calving traits, multi-trait models show a slight advantage over univariate models. Extended sire models (−maternal grandsire) are more practical and robust than animal models. Estimated genetic parameters for calving traits of UK Holstein cattle are consistent with literature. Calculating an aggregate estimated breeding value including direct and maternal values should encourage breeders to consider both direct and maternal effects in selection decisions.</p