Multi-instanton and string loop corrections in toroidal orbifold models

We analyze N=2 (perturbative and non-perturbative) corrections to the effective theory in type I orbifold models where a dual heterotic description is available. These corrections may play an important role in phenomenological scenarios. More precisely, we consider two particular compactifications: the Bianchi-Sagnotti-Gimon-Polchinski orbifold and a freely-acting Z_2 x Z_2 orbifold with N=1 supersymmetry and gauge group SO(q) x SO(32-q). By exploiting perturbative calculations of the physical gauge couplings on the heterotic side, we obtain multi-instanton and one-loop string corrections to the K\"ahler potential and the gauge kinetic function for these models. The non-perturbative corrections appear as sums over relevant Hecke operators, whereas the one-loop correction to the K\"ahler potential matches the expression proposed in [1,2]. We argue that these corrections are universal in a given class of models where target-space modular invariance (or a subgroup of it) holds.Comment: 37 pages, 3 figure

Massive wavefunctions, proton decay and FCNCs in local F-theory GUTs

We study the coupling of MSSM fields to heavy modes through cubic superpotential interactions in F-theory SU(5) GUTs. The couplings are calculated by integrating the overlap of two massless and one massive wavefunctions. The overlap integral receives contributions from only a small patch around a point of symmetry enhancement thereby allowing the wavefunctions to be determined locally on flat space, drastically simplifying the calculation. The cubic coupling between two MSSM fields and one of the massive coloured Higgs triplets present in SU(5) GUTs is calculated using a local eight-dimensional SO(12) gauge theory. We find that for the most natural regions of local parameter space the coupling to the triplet is comparable to or stronger than in minimal four-dimensional GUTs thereby, for those regions, reaffirming or strengthening constraints from dimension-five proton decay. We also identify possible regions in local parameter space where the couplings to the lightest generations are substantially suppressed compared to minimal four-dimensional GUTs. We further apply our results and techniques to study other phenomenologically important operators arising from coupling to heavy modes. In particular we calculate within a toy model flavour non-universal soft masses induced by integrating out heavy modes which lead to FCNCs.Comment: 54 pages, 10 figures; v2: references added, minor correction

Flux-induced Soft Terms on Type IIB/F-theory Matter Curves and Hypercharge Dependent Scalar Masses

Closed string fluxes induce generically SUSY-breaking soft terms on supersymmetric type IIB orientifold compactifications with D3/D7 branes. This was studied in the past by inserting those fluxes on the DBI+CS actions for adjoint D3/D7 fields, where D7-branes had no magnetic fluxes. In the present work we generalise those computations to the phenomenologically more relevant case of chiral bi-fundamental fields laying at 7-brane intersections and F-theory local matter curves. We also include the effect of 7-brane magnetic flux as well as more general closed string backgrounds, including the effect of distant (anti-)D3-branes. We discuss several applications of our results. We find that squark/slepton masses become in general flux-dependent in F-theory GUT's. Hypercharge-dependent non-universal scalar masses with a characteristic sfermion hierarchy m_E^2 < m_L^2 < m_Q^2 < m_D^2 < m_U^2 are obtained. There are also flavor-violating soft terms both for matter fields living at intersecting 7-branes or on D3-branes at singularities. They point at a very heavy sfermion spectrum to avoid FCNC constraints. We also discuss the possible microscopic description of the fine-tuning of the EW Higgs boson in compactifications with a MSSM spectrum.Comment: 67 pages, 2 figures, 2 table

Inference of Ancestral Recombination Graphs through Topological Data Analysis

The recent explosion of genomic data has underscored the need for interpretable and comprehensive analyses that can capture complex phylogenetic relationships within and across species. Recombination, reassortment and horizontal gene transfer constitute examples of pervasive biological phenomena that cannot be captured by tree-like representations. Starting from hundreds of genomes, we are interested in the reconstruction of potential evolutionary histories leading to the observed data. Ancestral recombination graphs represent potential histories that explicitly accommodate recombination and mutation events across orthologous genomes. However, they are computationally costly to reconstruct, usually being infeasible for more than few tens of genomes. Recently, Topological Data Analysis (TDA) methods have been proposed as robust and scalable methods that can capture the genetic scale and frequency of recombination. We build upon previous TDA developments for detecting and quantifying recombination, and present a novel framework that can be applied to hundreds of genomes and can be interpreted in terms of minimal histories of mutation and recombination events, quantifying the scales and identifying the genomic locations of recombinations. We implement this framework in a software package, called TARGet, and apply it to several examples, including small migration between different populations, human recombination, and horizontal evolution in finches inhabiting the Gal\'apagos Islands.Comment: 33 pages, 12 figures. The accompanying software, instructions and example files used in the manuscript can be obtained from https://github.com/RabadanLab/TARGe