140 research outputs found
Induced Anticlinic Ordering and Nanophase Segregation of Bow-Shaped Molecules in a Smectic Solvent
Recent experiments indicate that doping low concentrations of bent-core
molecules into calamitic smectic solvents can induce anticlinic and biaxial
smectic phases. We have carried out Monte Carlo (MC) simulations of mixtures of
rodlike molecules (hard spherocylinders with length/breadth ratio ) and bow- or banana-shaped molecules (hard spherocylinder dimers
with length/breadth ratio or 2.5 and opening angle ) to
probe the molecular-scale organization and phase behavior of rod/banana
mixtures. We find that a low concentration (3%) of dimers
induces anticlinic (SmC) ordering in an untilted smectic (SmA) phase for
. For smaller , half of each bow-shaped
molecule is nanophase segregated between smectic layers, and the smectic layers
are untilted. For , no tilted phases are induced. However,
with decreasing we observe a sharp transition from {\sl intralamellar}
nanophase segregation (bow-shaped molecules segregated within smectic layers)
to {\sl interlamellar} nanophase segregation (bow-shaped molecules concentrated
between smectic layers) near . These results demonstrate that
purely entropic effects can lead to surprisingly complex behavior in rod/banana
mixtures.Comment: 5 pages Revtex, 7 postscript figure
Symmetries and Elasticity of Nematic Gels
A nematic liquid-crystal gel is a macroscopically homogeneous elastic medium
with the rotational symmetry of a nematic liquid crystal. In this paper, we
develop a general approach to the study of these gels that incorporates all
underlying symmetries. After reviewing traditional elasticity and clarifying
the role of broken rotational symmetries in both the reference space of points
in the undistorted medium and the target space into which these points are
mapped, we explore the unusual properties of nematic gels from a number of
perspectives. We show how symmetries of nematic gels formed via spontaneous
symmetry breaking from an isotropic gel enforce soft elastic response
characterized by the vanishing of a shear modulus and the vanishing of stress
up to a critical value of strain along certain directions. We also study the
phase transition from isotropic to nematic gels. In addition to being fully
consistent with approaches to nematic gels based on rubber elasticity, our
description has the important advantages of being independent of a microscopic
model, of emphasizing and clarifying the role of broken symmetries in
determining elastic response, and of permitting easy incorporation of spatial
variations, thermal fluctuations, and gel heterogeneity, thereby allowing a
full statistical-mechanical treatment of these novel materials.Comment: 21 pages, 4 eps figure
Identification of the methyltransferase targeting C2499 in Deinococcus radiodurans 23S ribosomal RNA
Post-transcriptional modifications in the small subunit ribosomal RNA from Thermotoga maritima, including presence of a novel modified cytidine
Post-transcriptional modifications of RNA are nearly ubiquitous in the principal RNAs involved in translation. However, in the case of rRNA the functional roles of modification are far less established than for tRNA, and are subject to less knowledge in terms of specific nucleoside identities and their sequence locations. Post-transcriptional modifications have been studied in the SSU rRNA from Thermotoga maritima (optimal growth 80°C), one of the most deeply branched organisms in the Eubacterial phylogenetic tree. A total of 10 different modified nucleosides were found, the greatest number reported for bacterial SSU rRNA, occupying a net of ∼14 sequence sites, compared with a similar number of sites recently reported for Thermus thermophilus and 11 for Escherichia coli. The relatively large number of modifications in Thermotoga offers modest support for the notion that thermophile rRNAs are more extensively modified than those from mesophiles. Seven of the Thermotoga modified sites are identical (location and identity) to those in E. coli. An unusual derivative of cytidine was found, designated N-330 (M (r) 330.117), and was sequenced to position 1404 in the decoding region of the rRNA. It was unexpectedly found to be identical to an earlier reported nucleoside of unknown structure at the same location in the SSU RNA of the archaeal mesophile Haloferax volcanii
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