Isolation of Bacteria with Potential Plant-Promoting Traits and Optimization of Their Growth Conditions

This research aimed at investigating the isolation and identification of bacterial strains with biological nitrogen-fixing capability and phosphate, potassium, and zinc solubilization activities from a durum wheat field under two different tillage practices including 10 years of conventional tillage (CT) and no-tillage (NT) practices. Attempts were also extended to estimate their relative abundances in the soil as well as to develop accurate mathematical models in determining the effect of different temperatures, NaCl concentrations and pH on the growth, and activity of selected isolates. Twelve effective bacterial strains, including Pseudomonas, Acinetobacter, and Comamonas genera, were identified with a great potential to solubilize the insoluble forms of phosphate (from 11.1 to 115.5 mg l−1 at pH 8), potassium (from 32.2 to 35.6 mg l−1 at pH 7), and zinc (from 1.11 to 389.90 mg l−1 at pH 9) as well as to fix N2 gas (from 19.9 to 25.2 mg l−1). To our knowledge, this is the first report of the ability of Comamonas testosteroni and Acinetobacter pittii to fix nitrogen and to solubilize insoluble potassium compound, respectively. Three families, Moraxellaceae, Pseudomonadaceae, and Comamonadaceae, showed a higher percentage of abundance in the NT samples as compared to the CT, but only significant difference was observed in the relative abundance of Pseudomonadaceae (P < 0.01). These strains could be definitively recommended as inoculants to promote plant growth in the wide ranges of pH, salinity levels (with maximum growth and complete inhibition of growth from 0.67–0.92% to 3.5–9.3% NaCl, respectively), and temperatures (2.1–45.1 °C)

Plant Growth and Root Morphology Are Affected by Earthworm-Driven (Eisenia sp.) Changes in Soil Chemico-Physical Properties: a Mesocosm Experiment with Broccoli and Faba Bean

Earthworms are "ecosystem engineers" that improve soil water and nutrient content, soil macroporosity, and aeration, and provide suitable habitats for microbial populations. This study aimed at defining if the presence of epigeic earthworms (Eisenia sp.) affected the growth and development of two plant species (Brassica oleracea and Vicia faba) via the modifications of soil chemico-physical properties. A mesocosm experiment, in which plants were grown outdoors for 4 months with or without earthworms, was performed. The two plant species were selected based on their different habitus and root architecture and morphology. Soil macroporosity (M-soil) and water holding capacity (WHCsoil) were determined. Earthworm-driven bioturbation (B-soil) was measured by filling mesh bags with artificial soil. Earthworm abundance and biomass, together with plant morphometric parameters (root and leaf morphology by imaging and microscope techniques), were measured at the end of the trial. The presence of earthworms increased M-soil (on average +16%) and WHCsoil (on average +9%) and this was accompanied by a remarkable degree of B-soil. In most of the cases, earthworms enhanced plant growth in the two plant species studied, with a significant positive influence on the majority of the shoot and root traits. A significant increase of stomatal density (on average +24%) occurred in the leaves of both the plant species in the presence of earthworms. Our results confirmed the hypothesis that bioturbation by Eisenia sp. had a significant positive effect on plant growth, independently from the plant species cultivated, and that these growth-promoting effects were mediated by changes in soil chemico-physical parameters. By taking into account the essential role of earthworms in maintaining healthy soils and the vegetation they support, soils can become more resilient against environmental perturbations and climate change

Chemical, biochemical and microbiological properties of soils from abandoned and extensively cultivated olive orchards

The abandonment of olive orchards is a phenomenon of great importance triggered mainly by economic and social causes. The aim of this study was to investigate some chemical, biochemical and microbiological properties in a soil of a Southern olive grove abandoned since 25 years. In order to define the effect of the long-term land abandonment on soil properties, an adjacent olive grove managed according to extensive practices was taken as reference (essentially minimum tillage and no fertilization). Soil organic matter, total nitrogen and pH were significantly higher in the abandoned olive grove due to the absence of tillage and the natural inputs of organic matter at high C/N ratio which, inter alia, increased the number of cellulolytic bacteria and stimulated the activity of β-glucosidase, an indicator of a more advanced stage of soil evolution. The soil of the abandoned olive orchard showed a lower number of total bacteria and fungi and a lower microbial diversity, measured by means of the Biolog® method, as a result of a sort of specialization trend towards low quality organic substrates. From this point of view, the extensive cultivation management seemed to not induce a disturbance to microbiological communities

Seasonal variation in environmental DNA detection in sediment and water samples

The use of aquatic environmental DNA (eDNA) to detect the presence of species depends on the seasonal activity of the species in the sampled habitat. eDNA may persist in sediments for longer than it does in water, and analysing sediment could potentially extend the seasonal window for species assessment. Using the great crested newt as a model, we compare how detection probability changes across the seasons in eDNA samples collected from both pond water and pond sediments. Detection of both aquatic and sedimentary eDNA varied through the year, peaking in the summer (July), with its lowest point in the winter (January): in all seasons, detection probability of eDNA from water exceeded that from sediment. Detection probability of eDNA also varied between study areas, and according to great crested newt habitat suitability and sediment type. As aquatic and sedimentary eDNA show the same seasonal fluctuations, the patterns observed in both sample types likely reflect current or recent presence of the target species. However, given the low detection probabilities found in the autumn and winter we would not recommend using either aquatic or sedimentary eDNA for year-round sampling without further refinement and testing of the methods

Genetic diversity of soil bacteria

The Special Issue “Genetic Diversity of Soil Bacterial Communities” collected research and review articles addressing some relevant and unclear aspects of the composition and functioning of bacterial communities in rich or marginal agricultural soils, in field trials as well as in laboratory-scale experiments, at different latitudes and under different types of management