The use of airborne LiDAR data for the analysis of debris flow events in Switzerland

A methodology of magnitude estimates for debris flow events is described using airborne LiDAR data. Light Detection And Ranging (LiDAR) is a widely used technology to generate digital elevation information. LiDAR data in alpine regions can be obtained by several commercial companies where the automated filtering process is proprietary and varies from companies to companies. This study describes the analysis of geomorphologic changes using digital terrain models derived from commercial LiDAR data. The estimation of the deposition volumes is based on two digital terrain models covering the same area but differing in their time of survey. In this study two surveyed deposition areas of debris flows, located in the canton of Berne, Switzerland, were chosen as test cases. We discuss different grid interpolating techniques, other preliminary work and the accuracy of the used LiDAR data and volume estimates

Diversidade genética molecular entre cultivares e híbridos de Brachiaria spp. e Panicum maximum.

A utilização de marcadores moleculares pode servir para direcionar cruzamentos, confirmar novos híbridos e identificar genótipos para fins comerciais. Nesse contexto, o objetivo deste trabalho foi analisar a diversidade genética entre cultivares e híbridos de Brachiaria spp. e Panicum maximum usando marcadores moleculares do tipo RAPD (Polimorfismos de DNA amplificados ao acaso). Foram 22 genótipos analisados com 10 primers, os quais amplificaram 178 fragmentos polimórficos de DNA, que foram usados para estimar a similaridade genética por meio do coeficiente de Jaccard. Os valores de similaridade obtidos variaram de 0,066 a 0,841. A estrutura genética entre todos os genótipos estudados foi estimada pelo método UPGMA (Método de agrupamento com médias aritméticas não ponderadas), revelando três grupos distintos com altos valores de bootstrap (>89%). Os resultados demonstraram que a técnica RAPD oferece uma maneira rápida, relativamente barata e útil para a caracterização da diversidade genética entre as diferentes cultivares e híbridos de Brachiaria ssp. e P. maximum analisado

Prospeção de marcadores moleculares ligados à apomixia em Panicum maximum Jacq.

Trabalho

Variabilidade genética molecular em híbridos de Panicum maximum Jacq. avaliada por marcadores RAPD

Este trabalho foi realizado com o objetivo de caracterizar a diversidade genética molecular em híbridos de P. maximum Jacq. para auxiliar o programa de melhoramento dessa espécie

Optical sensing in microchip capillary electrophoresis by femtosecond laser written waveguides

Capillary electrophoresis separation in an on-chip integrated microfluidic channel is typically monitored with bulky, bench-top optical excitation/detection instrumentation. Optical waveguides allow confinement and transport of light in the chip directing it to a small volume of the microfluidic channel and collecting the emitted/transmitted radiation. However, the fabrication of optical waveguides or more complex photonic components integrated with the microfluidic channels is not a straightforward process, since it requires a localized increase of the refractive index of the substrate.\ud Recently, a novel technique has emerged for the direct writing of waveguides and photonic circuits in transparent glass substrates by focused femtosecond laser pulses.\ud In this work we demonstrate the integration of femtosecond laser written optical waveguides into a commercial microfluidic chip. We fabricate high quality waveguides intersecting the microchannels at arbitrary positions and use them to optically address with high spatial selectivity their content. In particular, we apply our technique to integrate optical detection in microchip capillary electrophoresis. Waveguides are inscribed at the end of the separation channel in order to optically excite the different plugs reaching that point; fluorescence from the labelled biomolecules crossing the waveguide output is efficiently collected at a 90° angle by a high numerical aperture optical fiber. The sensitivity of the integrated optical detection system was first evaluated filling the chip with a dye solution, obtaining a minimum detectable concentration of 40 pM. \ud After dynamic coating of the microchannels with an EPDMA polymer we demonstrate electrophoresis of an oligonucleotide plug with concentration down to 1 nM and wavelength-selective monitoring of on-chip separation of three fluorescent dyes. Work is in progress on separation and detection of fluorescent-labeled DNA fragments, targeting specific, diagnostically relevant regions of a template DNA, for application to the detection of chromosome aberrations

Universal hydrophilic coating of thermoplastic polymers currently used in microfluidics

A number of materials used to fabricate disposable microfluidic devices are hydrophobic in nature with water contact angles on their surface ranging from 80 to over 100. This characteristic makes them unsuitable for a number of microfluidic applications. Both the wettability and analyte adsorption parameters are highly dependent on the surface hydrophobicity. In this article, we propose a general method to coat the surface of five materials: polydimethylsiloxane (PDMS), cyclic olefin copolymer (COC), polyethylene terephthalate (PET), polycarbonate (PC), and polytetrafluoroethylene (PTFE). This fast and robust process, which is easily implementable in any laboratory including microfabrication clean room facilities, was devised by combining gas-phase and wet chemical modification processes. Two different coatings that improve the surface hydrophilicity were prepared via the "dip and rinse" approach by immersing the plasma oxidized materials into an aqueous solution of two different poly(dimethylacrylamide) copolymers incorporating a silane moiety and functionalized with either N-acryloyloxysuccinimide (NAS) (poly(DMA-NAS-MAPS) or glycidyl methacrylate (GMA) (poly(DMA-GMA-MAPS). The coating formation was confirmed by contact angle (CA) analysis comparing the variation of CAs of uncoated and coated surfaces subjected to different aging treatments. The antifouling character of the polymer was demonstrated by fluorescence and interferometric detection of proteins adsorbed on the surafce. This method is of great interest in microfluidics due to its broad applicability to a number of materials with varying chemical compositions

Quantum-critical spin dynamics in quasi-one-dimensional antiferromagnets

By means of nuclear spin-lattice relaxation rate 1/T1, we follow the spin dynamics as a function of the applied magnetic field in two gapped one-dimensional quantum antiferromagnets: the anisotropic spin-chain system NiCl2-4SC(NH2)2 and the spin-ladder system (C5H12N)2CuBr4. In both systems, spin excitations are confirmed to evolve from magnons in the gapped state to spinons in the gapples Tomonaga-Luttinger-liquid state. In between, 1/T1 exhibits a pronounced, continuous variation, which is shown to scale in accordance with quantum criticality. We extract the critical exponent for 1/T1, compare it to the theory, and show that this behavior is identical in both studied systems, thus demonstrating the universality of quantum critical behavior