Ollomo_PLoSPathog_2009_PHYML

Maximum likelihood tree inferred from the 4-gene concatenation using PHYML

Ollomo_PLoSPathog_2009

Nucleotide alignment concatenation of 4 mitochondrial genes for 17 Plasmodium species and one outgroup

Distribution of the different subspecies of chimpanzees, bonobos, and gorillas in Africa and representation of the spread of the different <i>Plasmodium</i> species in these subspecies.

<p>Distribution of the different subspecies of chimpanzees, bonobos, and gorillas in Africa and representation of the spread of the different <i>Plasmodium</i> species in these subspecies.</p

Historic overview of the molecular descriptions and of the names given to the different lineages (seven lineages) of the <i>Laverania</i> subgenus.

<p>The lineage number (1 to 7) is given following the phylogeny presented in <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat-1001283-g001" target="_blank">Figure 1A</a>.</p

Phylogeny of the <i>Laverania</i> subgenus.

<p>This phylogeny is based on partial <i>CytochromeB</i> sequences and including strains isolated and characterized in (A) Ollomo et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Ollomo1" target="_blank">[19]</a>, Prugnolle et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Prugnolle1" target="_blank">[22]</a>, Krief et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Krief1" target="_blank">[23]</a>, and Liu et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Liu1" target="_blank">[25]</a>, and in (B) Ollomo et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Ollomo1" target="_blank">[19]</a>, Prugnolle et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Prugnolle1" target="_blank">[22]</a>, Krief et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Krief1" target="_blank">[23]</a>, Duval et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Duval1" target="_blank">[24]</a>, and Liu et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Liu1" target="_blank">[25]</a>. The phylogenies were produced using a maximum likelihood approach and robustness was tested using 100 bootstraps. Names of the lineages were given following their first denomination (see <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat-1001283-t001" target="_blank">Table 1</a>) except for <i>P. billcollinsi</i>, which was first named by Rich et al. <a href="http://www.plospathogens.org/article/info:doi/10.1371/journal.ppat.1001283#ppat.1001283-Rich2" target="_blank">[21]</a> as <i>P. reichenowi</i>.</p

Sites of capture of small mammals.

<p>Sites of capture of small mammals.</p

Phylogenetic relationships among <i>Borrelia</i> species in Morocco.

<p>Phylogenetic relationships among <i>Borrelia</i> species in Morocco.</p

Geographic distribution of <i>Borrelia hispanica</i> (squares), <i>B. crocidurae</i> (triangles) and <i>B. merionesi</i> (stars) infections.

<p>Geographic distribution of <i>Borrelia hispanica</i> (squares), <i>B. crocidurae</i> (triangles) and <i>B. merionesi</i> (stars) infections.</p

Geographic distribution of <i>Ornithodoros erraticus</i> s.s. (red circles) and <i>O. sonrai</i> (light green circles).

<p>Geographic distribution of <i>Ornithodoros erraticus</i> s.s. (red circles) and <i>O. sonrai</i> (light green circles).</p

Results of <i>Ornithodoros erraticus</i> s.l surveys in Morocco.

*<p>: 1 = B. hispanica ; 2 = B. crocidurae ; 3 = B. merionesi.</p