Disturbance, Pollinator Predictability, and Pollination Success Among Costa Rican Cloud Forest Plants

Cloud forest at Monteverde, Costa Rica experiences frequent natural disturbance. To determine whether species interactions vary spatially due to physical heterogeneity produced by disturbance, we examined relationships between 22 plant species and 11 nectar—feeding bird species in 14 study plots distributed among three patch types: larger landslide—like gaps (hand—cleared areas along a trail), small gaps (formed by recent treefalls), and understory of closed—canopy forest. Species we describe here flowered in two or three patch types. The aspects of pollination we examined varied little with patch type. Mean frequency of pollinator visits varied with patch type in a few plant species but not in most, and there was no significant trend across species. Pollen loads carried by 314 mist—netted hummingbirds did not vary significantly with patch type, either in total number of grains or number of species represented. Cumulative pollen loads that hummingbirds deposited on stigmas of two species of Acanthaceae (Razisea spicata and Hansteinia blepharorachis) did not vary consistently with patch type, except that Hansteinia flowers in treefall gaps received fewer heterospecific pollen grains than flowers in the other two patch types. Frequency of fruit set varied significantly with patch type in three of the four species examined, but the direction of variation in one of these was opposite to the direction of the other two. The absolute frequency with which flowers were pierced by nectar—robbing hummingbirds did not vary significantly with patch type, although the frequency of piercing relative to legitimate pollinator visits did increase in the large gaps. We attribute the latter result to aggregation of the hummingbird Eupherusa eximia, a chronic nectar robber, at dense clumps of long—flowered plant species that occurred in large gaps. Only one feature we examined suggested that patch type might directly affect the nature of species interactions: in two different analyses, the level of variation in frequency of hummingbird visits to flowers declined from large gaps to small gaps to forest. Results suggest that, unless the disturbance initiating a patch is unusually severe or widespread, interactions between the plants and hummingbirds examined are insensitive to patch type. Such species, existing in naturally dynamic forests throughout their recent evolutionary histories, presumably have become accommodated to frequent small—scale disturbance. Results also suggest that those habitat—related contrasts in plant reproductive traits and plant—pollinator interactions documented in other studies, which compare habitats initiated by anthropogenic disturbances with undisturbed patches, may be artifacts to some extent. Anthropogenically generated disturbance mosaics may promote the spread of species whose reproductive traits evolved under very different circumstances from mosaics generated by natural disturbances

Evaluation of Character Displacement Among Plants in Two Tropical Pollination Guilds

In cloud forest at Monteverde, Costa Rica, two guilds of bird—pollinated plants exist; on guild pollinated by long—billed hummingbirds, primarily the Green Hermit (Phaethornis guy), and one guild pollinated by short—billed hummingbirds, primarily the Purple—throated Mountain—gem (Lampornis calolaema). Plants were assigned to guilds based on hummingbird visit patterns documented during >4000 plant—hours of field observations, and on identities of pollen grains collected from 600 mist—netted hummingbirds. Other studies indicated that pollination in these plants is often insufficient for maximum seed set. Each guild was examined for character displacement expected within a stable assemblage of plants structured by competition for pollination. (1) By comparing observed flowering phenologies with those obtained through a randomization procedure, we determined whether each species' phenology minimized overlap with the remainder of its guild. (2) We also examined complementarity between phenological displacement and morphological displacement in reproductive structures. Neither guild exhibited pronounced character displacement. (1) In most cases, flowering phenologies were indistinguishable from those generated at random; the few statistically significant departures mostly indicated aggregation, rather than displacement, of flowering seasons. (2) In most cases, morphological similarity was independent of phenological similarity. The only statistically significant result among the studied species was a positive correlation, among long—flowered species only, between rarity and uniqueness of flowering season. We do not conclude that this absence of expected pattern indicates that competition never occurs or that competition is an inconsequential ecological event. Rather, we attribute absence of pattern to the following aspects of biological variability, two of which we have demonstrated in other studies. (1) Within any one year, density—dependent competition for pollination is sporadic, and is not clearly related to flowering season or morphological similarity. (2) The nature of interspecific interactions varies among years, as neither the relative intensities of flowering nor the flowering seasons themselves are consistent from year to year. (3) The nature of interspecific interactions varies with changes in species composition, which occur over short distances. (4) The assemblage of species is probably not stable over long time spans; the species have Gleasonian ecologies that change distribution and abundance faster than natural selection or diffuse competition can screen out improper phenotypes or species, respectively

Interface and Composition Analysis on Perovskite Solar Cells.

Organometal halide (hybrid) perovskite solar cells have been fabricated following four different deposition procedures and investigated in order to find correlations between the solar cell characteristics/performance and their structure and composition as determined by combining depth-resolved imaging with time-of-flight secondary ion mass spectrometry (ToF-SIMS), X-ray photoelectron spectroscopy (XPS), and analytical scanning transmission electron microscopy (STEM). The interface quality is found to be strongly affected by the perovskite deposition procedure, and in particular from the environment where the conversion of the starting precursors into the final perovskite is performed (air, nitrogen, or vacuum). The conversion efficiency of the precursors into the hybrid perovskite layer is compared between the different solar cells by looking at the ToF-SIMS intensities of the characteristic molecular fragments from the perovskite and the precursor materials. Energy dispersive X-ray spectroscopy in the STEM confirms the macroscopic ToF-SIMS findings and allows elemental mapping with nanometer resolution. Clear evidence for iodine diffusion has been observed and related to the fabrication procedure.We acknowledge Lucio Cinà, Simone Casaluci, Stefano Razza and Narges Yaghoobi Nia for the technical support, “Polo Solare Organico” Regione Lazio, the “DSSCX” MIUR-PRIN2010 and FP7 ITN “Destiny” for funds. G.D., S.C. and C.D. acknowledge funding from ERC under grant number 259619 PHOTO EM. C.D. acknowledges financial support from the EU under grant number 312483 ESTEEM2.This is the final version of the article. It was first available from ACS via http://dx.doi.org/10.1021/acsami.5b0803

Mixed Support for Spatial Heterogeneity in Species Interactions: Hummingbirds in a Tropical Disturbance Mosaic

Many natural landscapes experience frequent disturbance on a small scale. Disturbance loosens or disrupts relations between species, or between species and resources, characteristic of intact communities. One result is the release of previously scarce resources, leading to increased productivity and increased intensity of species interactions in disturbed patches as compared with undisturbed patches. Additionally, populations in disturbed sites may exploit resources in a more haphazard and opportunistic fashion than populations in undisturbed sites. The altered ecological conditions of disturbed sites may favor species different from those occupying undisturbed sites, leading to spatial heterogeneity in community composition. Nectar-feeding birds (mainly hummingbirds) inhabiting the natural disturbance mosaic of a Costa Rican cloud forest responded to habitat heterogeneity in complex ways. Whereas most ecological traits of hummingbird assemblages varied among patch types (understory of canopied forest; treefall gaps; large, landslide-like gaps), the direction of variation differed for different traits. Density of hummingbird food (nectar) was highest in treefall gaps, and some characteristics of hummingbirds (e.g., species diversity) reflected this enrichment. Variables that involve collective foraging by the entire hummingbird assemblage (e.g., intensity of interspecific competition) suggest that species interactions in the forest are the least haphazard, those in treefall gaps more haphazard, and those in large gaps the most haphazard. Even the largest gaps examined, however, were rarely invaded by hummingbird "weeds" available in the regional species pool, and interactions in these gaps showed only faint resemblance to those in the tremendously fluctuating competitive environments that characterize nectar-feeding bird assemblages in large anthropogenic old fields nearby or at other tropical sites. Our results, and reconsideration of results from other studies involving natural disturbance mosaics, suggest that responses of consumers to disturbance mosaics may often be subtle and complex. Comparisons between patch types in a natural disturbance mosaic need not resemble comparisons between points in a successional sequence after anthropogenic disturbance

dbVar structural variant cluster set for data analysis and variant comparison

dbVar houses over 3 million submitted structural variants (SSV) from 120 human studies including copy number variations (CNV), insertions, deletions, inversions, translocations, and complex chromosomal rearrangements. Users can submit multiple SSVs to dbVAR that are presumably identical, but were ascertained by different platforms and samples, to calculate whether the variant is rare or common in the population and allow for cross validation. However, because SSV genomic location reporting can vary – including fuzzy locations where the start and/or end points are not precisely known – analysis, comparison, annotation, and reporting of SSVs across studies can be difficult. This project was initiated by the Structural Variant Comparison Group for the purpose of generating a non-redundant set of genomic regions defined by counts of concordance for all human SSVs placed on RefSeq assembly GRCh38 (RefSeq accession GCF_000001405.26). We intend that the availability of these regions, called structural variant clusters (SVCs), will facilitate the analysis, annotation, and exchange of SV data and allow for simplified display in genomic sequence viewers for improved variant interpretation. Sets of SVCs were generated by variant type for each of the 120 studies as well as for a combined set across all studies. Starting from 3.64 million SSVs, 2.5 million and 3.4 million non-redundant SVCs with count \u3e=1 were generated by variant type for each study and across all studies, respectively. In addition, we have developed utilities for annotating, searching, and filtering SVC data in GVF format for computing summary statistics, exporting data for genomic viewers, and annotating the SVC using external data sources

Role of the integrin αVβ3 in mediating increased smooth muscle cell responsiveness to IGF-I in response to hyperglycemic stress

Under usual conditions, the role of IGF-I in vascular cell types is to maintain cellular protein synthesis and cell size, and even excess IGF-I does not stimulate proliferation. In pathophysiologic states, such as hyperglycemia, smooth muscle cells (SMC) de-differentiate and change their responsiveness to IGF-I. During hyperglycemia IGF-I stimulates both SMC migration and proliferation. Our laboratory has investigated the molecular mechanism by which this change is mediated. Following hyperglycemia SMC secrete increased concentrations of thrombospondin, vitronectin and osteopontin, ligands for the integrin αVβ3. Activation of αVβ3 stimulates recruitment of a tyrosine phosphatase, SHP-2. Exposure of SMC to IGF-I results in phosphorylation of the transmembrane protein, SHPS-1, which provides a docking site for αVβ3-associated SHP-2. After IGF-I stimulation SHP-2 associates with Src kinase, which associates with the signaling protein Shc. Src phosphorylates Shc, resulting in activation of MAP kinases, which are necessary both for stimulation of cell proliferation and migration. Blocking activation of αVβ3 results in an inability of IGF-I to stimulate Shc phosphorylation. Under conditions of normoglycemia, there are insufficient αVβ3 ligands to recruit SHP-2, and no increase in Shc phosphorylation can be demonstrated in SMC. In contrast, if αVβ3 ligands are added to cells in normal glucose, the signaling events that are necessary for Shc phosphorylation can be reconstituted. Therefore when SMC are exposed to normal glucose they are protected from excessive stimulation of mitogenesis by IGF-I. With hyperglycemia there is a marked increased in αVβ3 ligands and Shc phosphorylation in response to IGF-I is sustained. These findings indicate that in SMC hyperglycemic stress may leads to altered IGF-I signaling, which allows the cells to undergo a mitogenic response, and which may contribute to the development of atherosclerosis