Discovery and fine-mapping of glycaemic and obesity-related trait loci using high-density imputation

Reference panels from the 1000 Genomes (1000G) Project Consortium provide near complete coverage of common and low-frequency genetic variation with minor allele frequency ≥0.5% across European ancestry populations. Within the European Network for Genetic and Genomic Epidemiology (ENGAGE) Consortium, we have undertaken the first large-scale meta-analysis of genome-wide association studies (GWAS), supplemented by 1000G imputation, for four quantitative glycaemic and obesity-related traits, in up to 87,048 individuals of European ancestry. We identified two loci for body mass index (BMI) at genome-wide significance, and two for fasting glucose (FG), none of which has been previously reported in larger meta-analysis efforts to combine GWAS of European ancestry. Through conditional analysis, we also detected multiple distinct signals of association mapping to established loci for waist-hip ratio adjusted for BMI (RSPO3) and FG (GCK and G6PC2). The index variant for one association signal at the G6PC2 locus is a low-frequency coding allele, H177Y, which has recently been demonstrated to have a functional role in glucose regulation. Fine-mapping analyses revealed that the non-coding variants most likely to drive association signals at established and novel loci were enriched for overlap with enhancer elements, which for FG mapped to promoter and transcription factor binding sites in pancreatic islets, in particular. Our study demonstrates that 1000G imputation and genetic fine-mapping of common and low-frequency variant association signals at GWAS loci, integrated with genomic annotation in relevant tissues, can provide insight into the functional and regulatory mechanisms through which their effects on glycaemic and obesity-related traits are mediated

Discovery and Fine-Mapping of Glycaemic and Obesity-Related Trait Loci Using High-Density Imputation

Reference panels from the 1000 Genomes (1000G) Project Consortium provide near complete coverage of common and low-frequency genetic variation with minor allele frequency ≥0.5% across European ancestry populations. Within the European Network for Genetic and Genomic Epidemiology (ENGAGE) Consortium, we have undertaken the fi

Movement, habitat utilization and behaviour of coral trout Plectropomus leopardus during and after the reproductive period on the southern Great Barrier Reef

Coral trout Plectropomus leopardus (mean total length = 498.9 +/- 19.7 mm, n = 10) were tagged and tracked with ultrasonic transmitters over 81 d at an intra-lagoonal location at One Tree Island, Great Barrier Reef, Australia (23.4979 degrees S, 152.0712 degrees E). Movement and habitat preferences were compared during the transition between the reproductive and post-reproductive period. Overall, mean movement was highest between 05: 00 and 10: 00 h, with the most movement during the crepuscular period and the least movement at night. There was no difference in nighttime movement during or after the reproductive period. Mean daily movement (14.48 +/- 0.26 km d(-1)) and fish depths (4.23 +/- 0.02 m) during the post-reproductive period were significantly greater than both movement (10.63 +/- 0.13 km d(-1)) and depths occupied (3.38 +/- 0.01 m) during the reproductive period, which was likely related to reallocation of bioenergetic resources to foraging related activities rather than spawning. Most fish movement was localized (within 0.04 km(2)), with some movements recorded outside of this area to a maximum distance of 0.6 km. Fish traversed sand and small scattered coral out-croppings to reach areas of continuous reef. The ranges of movement and habitat preferences described in this study are important for future research on habitat requirements and behavioural changes across the transition period between reproductive and post-reproductive states. Furthermore, this study provides additional information that may be used for focusing and delineating species-specific Marine Protected Area management plans