3 research outputs found
Modeling Linear and Cyclic PKS Intermediates through Atom Replacement
- Author
- Abe I.
- Akey D. L.
- Alexander R. White
- Ames B. D.
- Andrew J. Schaub
- Bumpus S. B.
- Calo F.
- Charest M. G.
- Crawford J. M.
- Crump M. P.
- D. John Lee
- Daniel T. Fox
- Das A.
- Emily R. Gwozdziowski
- Evans S. E.
- Fernández-Moreno M. A.
- Fiona Wong
- Foley T. L.
- Fouché M.
- Gaurav Shakya
- Harris T. M.
- Harris T. M.
- Haushalter R. W.
- Heriberto Rivera
- James J. La Clair
- Javidpour P.
- Jesus F. Barajas
- Joel Bruegger
- Johnson W. S.
- Khosla C.
- Korman T. P.
- Kosa N. M.
- La Clair J. J.
- Marsini M. A.
- Matt J. Jaremko
- Meier J. L.
- Michael D. Burkart
- Navarro I.
- Nguyen C.
- Pan H.
- Parminder Kaur
- Pichersky E.
- Poralla K.
- Płoskoń E.
- Revill W. P.
- Revill W. P.
- Robert W. Haushalter
- Roujeinikova A.
- Rudd B. A.
- Ruzicka L.
- Ruzicka L.
- Sadler P. A.
- Schmidt R.
- Shiou-Chuan Tsai
- Stork G.
- Stork G.
- Stork G.
- Sun C.
- Teufel R.
- Tsai S. C.
- Worthington A. S.
- Wright P. M.
- Xu R.
- Yoder R. A.
- Publication venue
- 'American Chemical Society (ACS)'
- Publication date
- 01/12/2014
- Field of study
[Image: see text] The mechanistic details of many polyketide synthases (PKSs) remain elusive due to the instability of transient intermediates that are not accessible via conventional methods. Here we report an atom replacement strategy that enables the rapid preparation of polyketone surrogates by selective atom replacement, thereby providing key substrate mimetics for detailed mechanistic evaluations. Polyketone mimetics are positioned on the actinorhodin acyl carrier protein (actACP) to probe the underpinnings of substrate association upon nascent chain elongation and processivity. Protein NMR is used to visualize substrate interaction with the actACP, where a tetraketide substrate is shown not to bind within the protein, while heptaketide and octaketide substrates show strong association between helix II and IV. To examine the later cyclization stages, we extended this strategy to prepare stabilized cyclic intermediates and evaluate their binding by the actACP. Elongated monocyclic mimics show much longer residence time within actACP than shortened analogs. Taken together, these observations suggest ACP-substrate association occurs both before and after ketoreductase action upon the fully elongated polyketone, indicating a key role played by the ACP within PKS timing and processivity. These atom replacement mimetics offer new tools to study protein and substrate interactions and are applicable to a wide variety of PKSs
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Special Reviewers
- Author
- Abma Joyce
- Acock Alan
- Acs Gregory
- Adams Michele
- Adams Ryan
- Adler Marina A.
- Adler-Baeder Francesca
- Ainsworth James W.
- Amin Sajeda
- Anderson Kathryn
- Anderson Kristin
- Anderson Peter
- Anderson Siwan
- Angel Jacqueline
- Ann Powell Mary
- Arnet Connidis Ingrid
- Arrighi Barbara
- Atkinson Alice M.
- Avellar Sarah
- Babcock Renee
- Baber Kristine
- Bachman Heather
- Badgett M. V. Lee
- Bahr Kathleen S.
- Bahr Stephen
- Baker Paul
- Banerjee Leena
- Baolian Qin Desiree
- Barber Jennifer
- Barker Judith C.
- Barnes Grace M.
- Barnett Rosalind C.
- Barnett Rosemary
- Bartell Denise S.
- Bartfeld Judi
- Bartkowski John
- Bartle-Haring Suzanne
- Bass Brenda L.
- Batson Christie D.
- Baum II Charles L.
- Bauman Karl E.
- Beach Steven
- Beattie Irenee R.
- Beets Gijs
- Belcastro Philip
- Benda Brent B.
- Benin Mary
- Benson Mark
- Berardo Felix M.
- Berger Lawrence M.
- Berger Roni
- Berke Debra L.
- Berry Brent
- Beutel Ann M.
- Biddlecom Ann
- Bielby Denise D.
- Binstock Georgina
- Bjarnason Thoroddur
- Blair Clancy
- Blaisure Karen R.
- Blieszner Rosemary
- Blume Libby
- Bogin Catherine
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- Boss Pauline
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- Bradbury Thomas N.
- Bradley Robert H.
- Brady-Smith Christy
- Bratter Jenifer
- Braun Bonnie
- Brayfield April A.
- Brennom Jennifer M.
- Britto Pia
- Brown B. Bradford
- Brown J. Brian
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- Bryson Alex
- Buchanan Christy
- Budescu David V.
- Bufford Rodger
- Bulanda Jennifer
- Bulanda Ronald
- Bumpass Larry L.
- Bumpus Matt
- Burdette Amy M.
- Burgoyne Carole
- Burr Jeffrey A.
- Butler Amy C.
- Butler Sarah M.
- Bygren Magnus
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- Capaldi Deborah
- Carbone-Lopez Kristin
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- Carlson Elwood
- Carlson Marcy J.
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- Carr Steelman Lala
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- Cassidy Margaret L.
- Castle Kathryn
- Cate Rodney M.
- Chan Willaim
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- Chen Zeng-yin
- Cheng Simon
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- Christensen Andrew
- Christopher F. Scott
- Christopher Karen L.
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- Clements Mari
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- Shorter-Gooden Kumea
- Shuey Kim
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- Publication venue
- Publication date
- 01/12/2005
- Field of study
Annals, Volume 107 Index
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- A Multiscalar Approach for Identifying Clusters and Segregation Patterns That Avoids the Modifiable Areal Unit Problem
- A New Global Land-Use and Land-Cover Change Product at a 1-km Resolution for 2010 to 2100 Based on Human–Environment Interactions
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- Changes in Exposure to Flood Hazards in the United States
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- Chapagain Prem Sagar
- Characteristics of Precipitating Storms in Glacierized Tropical Andean Cordilleras of Peru and Bolivia L
- Charting Time
- Chen Guangzhao
- Chen Yimin
- Chhatre Ashwini
- Children Critical Geopolitics, and Peace: Mapping and Mobilizing Children's Hopes for Peace in the Philippines
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- Chua C. Y.
- Chun Yongwan
- Clark Julian
- Clay Nathan
- Climate Change and Financial Instability
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- Contesting Moral Capital in the Economy of Expectations of an Extractive Frontier
- Contesting the Unethical City
- Controls on Mountain Plant Diversity in Northern California
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- Corporations Governments, and Socioenvironmental Policy in China
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- Cultures of Carbon and the Logic of Care
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- Deriving Small Area Mortality Estimates Using a Probabilistic Reweighting Method
- Detecting Patterns of Climate Change at Volcán Chimborazo Ecuador, by Integrating Instrumental Data
- Dewulf Art
- Digital Hegemonies
- Dimensions of Power in Regulatory Regime Selection
- Domosh Mona
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- Dong Guanpeng
- Dorn Ronald I.
- Doshi Sapana
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- Doyle Martin
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- Estimates of Extreme Precipitation Frequency Derived from Spatially Dense Rain Gauge Observations
- Estimating Available Abandoned Cropland in the United States
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- Gahman Levi
- Gandy Matthew
- Gao Peichao
- Genealogies of Race Gender, and Place
- Geomorphometric Controls on Mountain Glacier Changes Since the Little Ice Age in the Eastern Tien Shan Central Asia
- George Demko
- Gergan Mabel Denzin
- Ghertner D. Asher
- Gleason Colin J.
- Global Spatial–Temporal Variability in Terrestrial Productivity and Phenology Regimes between 2000 and 2012
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- Graham Mark
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- Grown Close to HomeTM
- Gurung Praju
- Hall Ola
- Hamilton Stuart E.
- Han Xiao
- Harbor Jon
- Harnessing the State
- Harris Paul
- Hawkins Harriet
- Hellström Robert Åke
- Hennerdal Pontus
- Heritage as Weapon
- Hidden Abodes
- Holland Edward C.
- Hopkins Peter
- How Is the Neighborhood Environment Related to the Health of Seniors Living in Hong Kong
- How Rivers Get Across Mountains
- Huber Matthew T.
- Hybrid Sovereignty and the State of Exception in the Palestinian Refugee Camps in Lebanon
- Ibarra J.
- Impacts of Glacier Recession and Declining Meltwater on Mountain Societies
- Incorporating Autonomous Sensors and Climate Modeling to Gain Insight into Seasonal Hydrometeorological Processes within a Tropical Glacierized Valley
- Inequality in Beijing
- Intradisciplinarity and Visual Politics
- Ipsen Annabel
- J. Ross Mackay 1915–2014 (In Memoriam), Christopher R
- Jackson M.
- Jackson Sue
- Jacobson-Tepfer
- Jazeel Tariq
- Joassart-Marcelli Pascale
- Kang Wei
- Karpouzoglou Timothy
- Katagiri Keiko
- Kay Kelly
- Keiler Margreth
- Khumbi yullha and the Beyul
- Kinney Mitch
- Knapp Gregory
- Koo Hyeongmo
- La Frenierre Jeff
- Lakhanpal Shikha
- Lam Nina S. N.
- Lam Winnie W. Y.
- Lantz Trevor C.
- Larson Phillip H.
- Lewis Gregory B.
- Lewis Hannah
- Leyk Stefan
- Li Pengcheng
- Li Xia
- Li Yanan
- Li Yingkui
- Li Yu
- Liang Xun
- Linke Andrew M.
- Lipton Jennifer K.
- Liu Gang
- Liu Xiaoping
- Liu Zhao
- Living with Earthquakes and Angry Deities at the Himalayan Borderlands
- Loo Becky P. Y.
- Lovette John P.
- Lu Xiaoyu
- Ma Jing
- Maciewjewski Ross
- Mack Elizabeth A.
- Mahendran Rathi
- Malanson George P.
- Mamani Guido
- Mansfield Becky
- Mao Feng
- Mark Bryan G.
- Mark Bryan G.
- Mark Bryan Greenwood
- Martin Michael E.
- Mattingly Kyle S.
- McDermott Dave
- McDonald Fergus
- McNeill Jodi L.
- Meacham James E.
- Meek Norman
- Miller Paul W.
- Millones Marco
- Mills Amy
- Mills-Novoa Megan
- Mitchell Gordon
- Mock Cary J.
- Molden Olivia C.
- Montoya Nilton
- Morales Danielle X.
- Mountain Ecology Remoteness
- Mountainous Terrain and Civil Wars
- Mountains
- Multiscale Geographically Weighted Regression (MGWR)
- Murton Galen
- Nanga Parbat Revisited
- Natural Hazard Management from a Coevolutionary Perspective
- Nature
- Negative Luminescence
- Neimark Benjamin D.
- Nelson Frederick E.
- Nelson Trisalyn A.
- Neo Harvey
- Niedomysl Thomas
- Nielsen Michael Meinild
- Nolin Anne W.
- Nüsser Marcus
- O'Loughlin John
- O'Neal Blaire
- Olivencia
- Olmo Rafael Mata
- On the Production of Climate Information in the High Mountain Forests of Guatemala
- Optimal Map Classification Incorporating Uncertainty Information
- Palm Risa
- Palmer Lisa
- Parry Luke
- Pei Fengsong
- Perestroika to Parkland
- Perry L
- Phoenix Cassandra
- Pipelines Petitions, and Protests in the Internet Age
- Pizarro J.
- Polk Molly H.
- Ponette-González Alexandra G.
- Pons Diego
- Posthuman Agency in the Digitally Mediated City
- Poverty Religious Differences, and Child Mortality in the Early Twentieth Century
- Prasanna Satya
- Production Property, and the Construction of Remotely Sensed Data
- Prudham Scott
- Pulido Laura
- Qiang Yi
- Quispe Nelson
- Rado Maxwell
- Ramadan Adam, and Sara Fregonese
- Ranganathan Malini
- Rasmussen Mattias Borg
- Regmi Santosh
- Reid-Musson Emily
- Relations of Alpine Plant Communities across Environmental Gradients
- Retreating Glaciers Incipient Soils, Emerging Forests
- Rooted in Place? The Coproduction of Knowledge and Space in Agroforestry Assemblages
- Rose Gillian
- Rozzi Ricardo
- Rural Rentierism and the Financial Enclosure of Maine's Open Lands Tradition
- Ruther Matt
- Röthlisberger Veronika
- Sanghera Gurchathen
- Sarmiento Fausto O.
- Saunders Michelle E.
- Schmidt Susanne
- Schuch Laura
- Schuurman Nadine
- Scott Christopher A.
- Seimon Anton
- Sen Shilad
- Senkbeil Jason C.
- Seong Yeong Bae
- Sexual Orientation Gender, and Environmental Injustice
- Seymour Lynne
- Shin Michael
- Sin Harng Luh
- Skog Lindsay A.
- Slocum Terry A.
- Smith Will
- Snowlines and Treelines in the Tropical Andes
- Some Perspectives on Avalanche Climatology
- Stoddard Elisabeth A.
- Structuring Hydrosocial Relations in Urban Water Governance
- Subramanian S. V.
- System Effects
- Taylor Brent
- Taylor Matthew J.
- Temperature Influences on Salmonella Infections across the Continental United States
- Thaler Gregory M.
- Thaler Thomas
- Thapa Bhuwan
- The Carbon Holdings of Northern Ecuador's Mangrove Forests
- The Cultural Geopolitics of Ethnic Nationalism
- The Devotions of Restoration: Materiality Enthusiasm, and Making Three
- The Land Sparing Complex
- The Sacred Mountain Shiveet Khairkhan (Bayan Ölgiy aimag Mongolia) and the Centering of Cultural Indicators in the Age of Nomadic Pastoralism
- The Scientific Discovery of Glaciers in the American West
- Thompson Shanley D.
- Thornton Thomas F.
- Trends and Issues in the Use of Quantitative Color Schemes in Refereed Journals
- Tsutsumida Narumasa, Paul Harris, and Alexis Comber
- Uejio Christopher K.
- Unified Metrics for Characterizing the Fractal Nature of Geographic Features
- Unlearning “Landscape”
- Using Geonarratives to Explore the Diverse Temporalities of Therapeutic Landscapes
- Using Internal Migration to Estimate the Causal Effect of Neighborhood Socioeconomic Context on Health
- Using Satellite Data on Nighttime Lights Intensity to Estimate Contemporary Human Migration Distances
- Vanek Steven J.
- Velarde Fernando
- Vermeylen Saskia
- Waite Louise
- Wang Feng
- Wang Shaojian
- Wang Yue
- Water as “Time-Substance”
- Water Is Life
- Webber Michael
- What Causes People to Change Their Opinion about Climate Change?
- Wheeler Benedict W.
- Whelan Paul
- When Is the State? Topology
- White Travis M.
- Winkelmann I. Ronald
- Witmer Frank D. W.
- Woon Chih Yuan
- Wright Richard A.
- Wulder Michael A.
- Xie Xiaoxiao
- Xu Xiaocong
- Yang Wenbai
- Young Kenneth R.
- Yuter Sandra E.
- Zhang Chengqi
- Zhang Wenzhong
- Zhao Hongrui
- Zimmerer Karl S.
- Zimmerman Dale L.
- Zischg Andreas
- Zou Lei
- Publication venue
- 'Informa UK Limited'
- Publication date
- Field of study