In situ hybridization of two cloned chromosome 7 sequences tightly linked to the cystic fibrosis locus

Two DNA sequences closely linked to the cystic fibrosis locus have been sublocalized to 7q31.3→q32 by in situ hybridization. These findings are consistent with previously published maps of that region of human chromosome 7. The cystic fibrosis locus therefore maps to the 7q31.3→q32 region, a more distal location than had been inferred from previous data.published_or_final_versio

Average transmission probability of a random stack

The transmission through a stack of identical slabs that are separated by gaps with random widths is usually treated by calculating the average of the logarithm of the transmission probability. We show how to calculate the average of the transmission probability itself with the aid of a recurrence relation and derive analytical upper and lower bounds. The upper bound, when used as an approximation for the transmission probability, is unreasonably good and we conjecture that it is asymptotically exact.Comment: 10 pages, 6 figure

30 years of hay meadow succession without fertilization: how does it affect soil and avifauna groups?

In the present study we investigated the effects of hay meadow succession in the brook valley system of the Drentse A Nature Reserve, in the NE of the Netherlands. In particular, we compared the plant and soil fauna composition in five grasslands that differed in the stage of vegetation succession in two well-studied chronosequences, dry and wet respectively. The sampled meadows include a control site (still fertilized meadow), a 5, 15, 25 and 32 years stage of vegetation succession after the cessation of fertilizer application. At all sites, vegetation and earthworm composition was studied in replicate subplots of 4 m2 respectively 0.04 m² each. Moreover, the breeding birds have been monitored in the area over the last 28 years by mapping territories overlapping the meadows of the chronosequences. Concerning the plants we found that diversity was increasing with time of succession. In the wet meadow series the plant species richness increased from ca. 13 species per site (40 m2) to a maximum of ca. 49 species per site in the latest successional stage. In the drier parts the increase in species was less and reached an over all maximum of 27 species in the intermediate (15 years old) stage of the succession in 40 m2, but still increased to a mean of 15 species at the scale of 4 m2 plots in the oldest stage. The diversity and abundance of earthworms dropped significantly over time of succession. The species all belonged to 4 genera with Allolobophora being the most abundant. Soil pH dropped significantly during the succession even below 3.8 in the dry series. This largely explains the unfavourable conditions for the earthworms to survive in the oldest stages of the dry succession. The earthworm biomass dropped in nearly all sites below 25 g/m2 during the summer period, indicating unfavourable conditions for a suit of grassland breeding waders.The abundance of breeding birds in general was low due to the rather small area covered in this study. Anyhow we could find obvious changes in the breeding bird community. In particular waders such as Lapwing (Vanellus vanellus) and Black-tailed Godwit (Limosa limosa) disappeared completely from the area and were followed up by Curlew (Numenius arquata) and Snipe (Gallinago gallinago) being currently also rare in the area. Probably due to changes in grassland vegetation (increase of amongst others Cirsium palustre) and insect abundance the Stonechat (Saxicola torquata) has entered the area as a breeding bird. The same happens to a set of bird species typical for developing carr woodlands such as Lesser Spotted Woodpecker (Dendrocopos minor) and Golden Oriole (Oriolus oriolus).Die vorliegende Studie thematisiert am Beispiel der Fließgewässerniederung der Drentse A, einem großflächigen Schutzgebiet im Nordosten der Niederlande, die Folgen einer langjährigen Heuwiesennutzung ohne Düngung. Im Einzelnen wurde von uns die Zusammensetzung der Vegetation und Bodenfauna auf fünf Grünlandflächen untersucht, die sich in der Dauer der Ausmagerung unterschieden. Getrennt betrachtet wurden dabei die bachnahen, moorigen Niederungsbereichen und die angrenzenden sandigen Geestbereiche. Die ausgewählten Grünlandflächen waren zum Zeitpunkt der Aufnahmen seit 5, 15, 25, und 32 Jahren gemäht aber nicht mehr gedüngt worden. Eine weitere, nach wie vor konventionell bewirtschaftete Wiesenfläche (incl. Düngung) diente als Kontrolle. Auf allen Flächen wurde die Vegetation und Regenwurmfauna in 10 Plots mit einer Größe von jeweils 4 m² bzw. 0.04 m² untersucht. Darüber hinaus wurden über 28 Jahre hinweg die Brutvögel des Gebietes mittels Revierkartierung erfasst. Die Pflanzenartendiversität hat sich mit Dauer der Ausmagerung signifikant erhöht. Sie stieg in den bachnahen Bereichen von 13 Arten in der Kontrollfläche (40 m²) auf 49 Arten in der am längsten ausgemagerten Grünlandfläche an. In den trockenen Geestbereichen war der Anstieg deutlich schwächer. Bezogen auf die Gesamtfläche von 40 m² wurden die meisten Arten hier in der 15 Jahre lang ausgemagerten Grünlandfläche gefunden, während bei Betrachtung der 4 m² großen Aufnahmepunkte die höchste Artenzahl ebenfalls in der ältesten Untersuchungsfläche lag. Die Diversität und Abundanz der Regenwürmer nahm mit Dauer der Ausmagerung ab. Die festgestellten Arten gehörten zu 4 Gattungen, wobei die Gattung Allolobophora am individuenreichsten vertreten war. Mit Dauer der Ausmagerung sank besonders im trockenen bachfernen Geestbereich der Boden-pH-Wert auf unter 3,8 ab. Die damit einhergehenden pessimalen Lebensbedingungen erklären hinreichend die geringe Diversität und Dichte von Regenwürmern in diesen Bereichen. An fast allen Standorten sank die Biomasse der Regenwürmer zum Sommer hin auf Werte unter 25 g/m², so dass für viele Limikolen zu dieser Zeit pessimale Ernährungsbedingungen bestehen. Die Zahl der Brutvogelarten war aufgrund des recht kleinen Untersuchungsgebietes insgesamt gering. Dennoch konnten auffallende Veränderungen in der Brutvogelgemeinschaft beobachtet werden. Während Limikolen wie Kiebitz (Vanellus vanellus) und Uferschnepfe (Limosa limosa) vollständig aus dem Gebiet verschwanden, wanderten der Große Brachvogel und die Bekassine ein. Allerdings sind auch sie aktuell nur noch selten im Gebiet vertreten. Dafür hat sich inzwischen das Schwarzkehlchen (Saxicola torquata) als Brutvogel eingestellt – möglicherweise eine Folge der sich ändernden Grünlandvegetation (hier: Zunahme von Pflanzenarten, die als Ansitzwarten fungieren können wie etwa Cirsium palustre) in Kombination mit einem verbesserten Nahrungsangebot an Makroinvertebraten. Eingewandert sind zwischenzeitlich auch eine Reihe weiterer Vogelarten, wie Pirol (Oriolus oriolus) und Kleinspecht (Dendrocopos minor), die charakteristisch für sich entwickelnde Bruchwälder sind. Letztere haben sich, meist kleinflächig, auf ehemaligen Feuchtgrünlandstandorten entwickelt

Foreword: Atrocity Prevention: The Role of International Law and Justice

The issue of atrocity prevention has taken something of a beating in the last few years, a victim perhaps of the transactional approach to security and other foreign policy issues that seem to be engulfing us. Yet this is an issue that cannot go away. Its staying power is a testament to its deep moral roots. The horrors of the Holocaust and the knowledge of the capacity of man for cruelty to his fellow man will haunt the world forever. The experience of our modern history– in Yugoslavia, Rwanda, Sudan, South Sudan, the Central African Republic and elsewhere – leave no doubt that mankind has not yet fulfilled to pledge of “never again” to the kinds of horrors that one would have hoped had been relegated to the dust heap of history. Men and women of good conscience must not avert their attention

Adjustable microchip ring trap for cold atoms and molecules

We describe the design and function of a circular magnetic waveguide produced from wires on a microchip for atom interferometry using deBroglie waves. The guide is a two-dimensional magnetic minimum for trapping weak-field seeking states of atoms or molecules with a magnetic dipole moment. The design consists of seven circular wires sharing a common radius. We describe the design, the time-dependent currents of the wires and show that it is possible to form a circular waveguide with adjustable height and gradient while minimizing perturbation resulting from leads or wire crossings. This maximal area geometry is suited for rotation sensing with atom interferometry via the Sagnac effect using either cold atoms, molecules and Bose-condensed systems

Cystic fibrosis: analysis of linkage of the disease locus to red cell and plasma protein markers

published_or_final_versio

Atom chips on direct bonded copper substrates

We present the use of direct bonded copper (DBC) for the straightforward fabrication of high power atom chips. Atom chips using DBC have several benefits: excellent copper/substrate adhesion, high purity, thick (> 100 microns) copper layers, high substrate thermal conductivity, high aspect ratio wires, the potential for rapid (< 8 hr) fabrication, and three dimensional atom chip structures. Two mask options for DBC atom chip fabrication are presented, as well as two methods for etching wire patterns into the copper layer. The wire aspect ratio that optimizes the magnetic field gradient as a function of power dissipation is determined to be 0.84:1 (height:width). The optimal wire thickness as a function of magnetic trapping height is also determined. A test chip, able to support 100 A of current for 2 s without failing, is used to determine the thermal impedance of the DBC. An assembly using two DBC atom chips to provide magnetic confinement is also shown.Comment: 8 pages, 5 figure

Nitrite oxidation exceeds reduction and fixed nitrogen loss in anoxic Pacific waters

© The Author(s), 2020. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Babbin, A. R., Buchwald, C., Morel, F. M. M., Wankel, S. D., & Ward, B. B. Nitrite oxidation exceeds reduction and fixed nitrogen loss in anoxic Pacific waters. Marine Chemistry, 224, (2020): 103814, doi:10.1016/j.marchem.2020.103814.The diversity of nitrogen-based dissimilatory metabolisms in anoxic waters continues to increase with additional studies to the marine oxygen deficient zones (ODZs). Although the microbial oxidation of nitrite (NO2–) has been known for over a century, studies of the pathways and microbes involved have generally proceeded under the assumption that nitrite oxidation to nitrate requires dioxygen (O2). Anaerobic NO2– oxidation until now has been conclusively shown only for anammox bacteria, albeit only as a limited sink for NO2– in their metabolism compared to the NO2– reduced to N2. Here, using direct experimental techniques optimized for replicating in situ anoxic conditions, we show that NO2– oxidation is substantial, widespread, and consistent across the ODZs of the eastern tropical Pacific Ocean. Regardless of the specific oxidant, NO2– oxidation rates are up to an order of magnitude larger than simultaneous N2 production rates for which these zones are known, and cannot be explained by anammox rates alone. Higher rates of NO2– oxidation over reduction in anoxic waters are paradoxical but help to explain how anammox rates can be enhanced over denitrification in shallow anoxic waters (σθ < 26.4) at the edge of the ODZs but not within the ODZ core. Furthermore, nitrite oxidation may be the key to reconciliation of the perceived imbalance of the global fixed nitrogen loss budget.This work was funded by National Science Foundation grants OCE–1029951 to B.B.W, BIO–1402109 to A.R.B., and OCE-1260373 to S.D.W. Additional financial support to A.R.B. was provided by Simons Foundation grant 622065 and the generous contributions of Dr. Bruce L. Heflinger