Fig. 1 in The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

Fig. 1. Comparison of properties of the analysed datasets. Datasets (AHE414 and UCEs) are described in Table 1. For each panel, letters above box plots reflect pairwise comparisons of marginal means estimated from the best-fit models; distributions sharing a letter do not differ significantly. Points: raw data (Table S2a). In (e), saturation was assessed by calculating the R2 of the linear regression of uncorrected p-distances against inferred distances in individual gene trees. Highest R2 are for least saturated loci. The scale of the Y axis is reversed to better show decrease in saturation. (f) The convergence of trees as saturation decreases. The Y axis shows the relative RF distance between pairs of trees obtained with either the combined exons or the combined UCEs. The X axis show the absolute value of the difference between the medians of the R2 of the linear regression of uncorrected p-distances against inferred distances in gene trees that were combined to get the compared trees [cf. (e)]. Four comparisons were performed in each case as datasets were analysed with and without partitioning.Published as part of <i>Cruaud, Astrid, Rasplus, Jean-Yves, Zha, Junxia, Burks, Roger, Delvare, Ǵerard, Fusu, Lucian, Gumovsky, Alex, Huber, John T., Jan̆sta, Petr, Mitroiu, Mircea-Dan, Noyes, John S., Noort, Simon van, Baker, Austin, Bohmova, Julie, Baur, Hannes, Blaimer, Bonnie B., Brady, Sean G., Bubeńıkova, Kristyna, Chartois, Marguerite, Copeland, Robert S., Papilloud, Natalie Dale-Skey, Molin, Ana Dal, Dominguez, Chrysalyn, Gebiola, Marco, Guerrieri, Emilio, Kresslein, Robert L., Krogmann, Lars, Lemmon, Emily, Murray, Elizabeth A., Nidelet, Sabine & Nieves-Aldrey, Jośe Luis, 2023, The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps, pp. 1-30 in Cladistics 2023</i> on page 6, DOI: 10.1111/cla.12561, <a href="http://zenodo.org/record/10115140">http://zenodo.org/record/10115140</a&gt

Fig. 2 in The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

Fig. 2. Overview of the topologies obtained with the different datasets as saturation decreases. Datasets (AHE414 and UCEs) are described in Table 1, and trees are available in Fig. S1 and Appendix S1. Groups that are discussed in text are highlighted. Only IQ-TREE trees are shown. ROTO/BAEO = Rotoitidae (Baeomorphidae); CHAL = Chalcididae; EURY = Eurytomidae; GALL = gall clade (see text); MYMA = Mymaridae; PTERO = group of Pteromalid wasps (Austroterobiinae; part Colotrechninae; Miscogastrinae; part Ormocerinae; Otitesellinae; Pteromalinae; Sycoecinae; Sycoryctinae); "Tiny Wasp clade" (see text).Published as part of <i>Cruaud, Astrid, Rasplus, Jean-Yves, Zha, Junxia, Burks, Roger, Delvare, Ǵerard, Fusu, Lucian, Gumovsky, Alex, Huber, John T., Jan̆sta, Petr, Mitroiu, Mircea-Dan, Noyes, John S., Noort, Simon van, Baker, Austin, Bohmova, Julie, Baur, Hannes, Blaimer, Bonnie B., Brady, Sean G., Bubeńıkova, Kristyna, Chartois, Marguerite, Copeland, Robert S., Papilloud, Natalie Dale-Skey, Molin, Ana Dal, Dominguez, Chrysalyn, Gebiola, Marco, Guerrieri, Emilio, Kresslein, Robert L., Krogmann, Lars, Lemmon, Emily, Murray, Elizabeth A., Nidelet, Sabine & Nieves-Aldrey, Jośe Luis, 2023, The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps, pp. 1-30 in Cladistics 2023</i> on page 8, DOI: 10.1111/cla.12561, <a href="http://zenodo.org/record/10115140">http://zenodo.org/record/10115140</a&gt

Fig. 5 in The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

Fig. 5. Global historical biogeography of Chalcidoidea and new classification. The chronogram obtained from the complete set of ingroup taxa is illustrated. The previous classification is used to annotate tips (four letter prefixes; see also Table S1 for complete information on sampling) with successive grey and white boxes grouping the tip labels. The new familial classification from Burks et al. (2022) is shown to the right. For clarity, ancestral ranges are given only up to family level and only for the BAYEAREALIKE + J model (which was selected by AICc). All inferences of ancestral ranges are provided in Fig. S5. Inferences of ancestral ranges were conducted with only one specimen per genus as shown with brackets that connect tips. Current distribution of genera is shown with coloured boxes at tips. Sampling area of specimens is indicated in tip labels. NEO = Neotropical; NEA = Nearctic; AFR = Afrotropical; PAL = Palaearctic; ORI = Oriental; AUS = Australasian. UKN = Unknown when collection data are unavailable. Stars indicate that specimens were sampled in areas where species was introduced or not yet cited. Sampling area for the specimen used for sequencing exons is listed first, sampling area for the specimen used for sequencing UCEs is listed second; n.a. is used when no specimen was sequenced and only one sampling area is reported when exons and UCEs were obtained from specimens sampled in the same areas (or from the same specimen). Unless specified, nodes are supported by SHaLRT ≥80%, UFBoot ≥95% and sCF ≥34.3 (minimum support for a family that is well defined morphologically, Trichogrammatidae). Nodes with a grey circle are supported by SHaLRT <80% or UFBoot <95%; nodes with a black circle are supported by SHaLRT <80% and UFBoot <95%; nodes with a black triangle are supported with sCF <34.3. Images on the left of tentative family names are all at the same scale. Images on the right of tentative family names have been magnified. Photos ©K. Bolte (Baeomorphidae); ©J.-Y. Rasplus (all others).Published as part of <i>Cruaud, Astrid, Rasplus, Jean-Yves, Zha, Junxia, Burks, Roger, Delvare, Ǵerard, Fusu, Lucian, Gumovsky, Alex, Huber, John T., Jan̆sta, Petr, Mitroiu, Mircea-Dan, Noyes, John S., Noort, Simon van, Baker, Austin, Bohmova, Julie, Baur, Hannes, Blaimer, Bonnie B., Brady, Sean G., Bubeńıkova, Kristyna, Chartois, Marguerite, Copeland, Robert S., Papilloud, Natalie Dale-Skey, Molin, Ana Dal, Dominguez, Chrysalyn, Gebiola, Marco, Guerrieri, Emilio, Kresslein, Robert L., Krogmann, Lars, Lemmon, Emily, Murray, Elizabeth A., Nidelet, Sabine & Nieves-Aldrey, Jośe Luis, 2023, The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps, pp. 1-30 in Cladistics 2023</i> on page 15, DOI: 10.1111/cla.12561, <a href="http://zenodo.org/record/10115140">http://zenodo.org/record/10115140</a&gt

Fig. 4 in The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

Fig. 4. The Chalcidoidea bush of life. (a) IQ-TREE tree obtained from the combined exonsAA+UCEs90-25 datasets (see also Fig. S1). Monophyletic families are in grey, para- or polyphyletic families are in colour. Higher level groups/clades discussed in text are highlighted with boxes. Statistical support for backbone nodes are shown with single (SH-aLRT ≧80% or UFboot ≧95%) or double stars (SH-aLRT ≧80% and UFboot ≧95%). (b) Contribution of the exonsAA and UCEs90-25 datasets to the combined tree. Gene concordance factor (gCF); gene discordance factor due to polyphyly (gDFP); site concordance factor averaged over 100 quartets (sCF). Points: raw data (Table S2d). (c) Comparison of branch length for the backbone nodes and other ingroup nodes. Points: raw data (Table S2c). For (b) and (c), stars above box plots indicate statistical significance: ns, p> 0.05; ***, p ≤ 0.001; ****, p ≤ 0.0001. (d) Correlation between node age and sCF (outgroups excluded). Points: raw data (Table S2e); line: regression curve for the best-fit model (log linear model; p <2.2e—16).Published as part of <i>Cruaud, Astrid, Rasplus, Jean-Yves, Zha, Junxia, Burks, Roger, Delvare, Ǵerard, Fusu, Lucian, Gumovsky, Alex, Huber, John T., Jan̆sta, Petr, Mitroiu, Mircea-Dan, Noyes, John S., Noort, Simon van, Baker, Austin, Bohmova, Julie, Baur, Hannes, Blaimer, Bonnie B., Brady, Sean G., Bubeńıkova, Kristyna, Chartois, Marguerite, Copeland, Robert S., Papilloud, Natalie Dale-Skey, Molin, Ana Dal, Dominguez, Chrysalyn, Gebiola, Marco, Guerrieri, Emilio, Kresslein, Robert L., Krogmann, Lars, Lemmon, Emily, Murray, Elizabeth A., Nidelet, Sabine & Nieves-Aldrey, Jośe Luis, 2023, The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps, pp. 1-30 in Cladistics 2023</i> on page 13, DOI: 10.1111/cla.12561, <a href="http://zenodo.org/record/10115140">http://zenodo.org/record/10115140</a&gt

The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

Cruaud, Astrid, Rasplus, Jean-Yves, Zha, Junxia, Burks, Roger, Delvare, Ǵerard, Fusu, Lucian, Gumovsky, Alex, Huber, John T., Jan̆sta, Petr, Mitroiu, Mircea-Dan, Noyes, John S., Noort, Simon van, Baker, Austin, Bohmova, Julie, Baur, Hannes, Blaimer, Bonnie B., Brady, Sean G., Bubeńıkova, Kristyna, Chartois, Marguerite, Copeland, Robert S., Papilloud, Natalie Dale-Skey, Molin, Ana Dal, Dominguez, Chrysalyn, Gebiola, Marco, Guerrieri, Emilio, Kresslein, Robert L., Krogmann, Lars, Lemmon, Emily, Murray, Elizabeth A., Nidelet, Sabine, Nieves-Aldrey, Jośe Luis (2023): The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps. Cladistics 2023: 1-30, DOI: 10.1111/cla.1256

Fig. 3 in The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps

Fig. 3. Collapsed summary cladograms. Combined AHE (exonsAA) and UCE (UCEs90-25) results for 433 taxa, 2054 loci including 103 395 AA +180 711 nucleotide sites. Results of IQ-TREE concatenated analysis with one partition for each type of data (exonsAA vs. UCEs90-25). SHaLRT/UFBoot/gCF/sCF are indicated at nodes. Clades were collapsed to higher level groups (family, subfamily, tribe). Colours are meant to allow for comparisons between trees. Vertical bars represent similar clade relationships for the analyses of IQ-TREE: UCEs90-25 (UCE407), exonsAA (AHE414), AHE520AA; parsimony: combined (COM433), UCEs90-25 (UCE407), exonsAA (AHE414), AHE520AA; Munro et al. (2011; 720 taxa); Heraty et al. (2013; 300 taxa). Vertical red bars with an X were not recovered as monophyletic in that analysis. Faded colour bars represent that the clade was included but relationships alternated. P indicates paraphyletic lineages. Clades without an X or bar were supported; the lack of a bar indicates the clade was supported but the deeper relationships were not. Higher group names refer to the classification before Burks et al. (2022). Family abbreviations expanded in Table S1.Published as part of <i>Cruaud, Astrid, Rasplus, Jean-Yves, Zha, Junxia, Burks, Roger, Delvare, Ǵerard, Fusu, Lucian, Gumovsky, Alex, Huber, John T., Jan̆sta, Petr, Mitroiu, Mircea-Dan, Noyes, John S., Noort, Simon van, Baker, Austin, Bohmova, Julie, Baur, Hannes, Blaimer, Bonnie B., Brady, Sean G., Bubeńıkova, Kristyna, Chartois, Marguerite, Copeland, Robert S., Papilloud, Natalie Dale-Skey, Molin, Ana Dal, Dominguez, Chrysalyn, Gebiola, Marco, Guerrieri, Emilio, Kresslein, Robert L., Krogmann, Lars, Lemmon, Emily, Murray, Elizabeth A., Nidelet, Sabine & Nieves-Aldrey, Jośe Luis, 2023, The Chalcidoidea bush of life: evolutionary history of a massive radiation of minute wasps, pp. 1-30 in Cladistics 2023</i> on page 9, DOI: 10.1111/cla.12561, <a href="http://zenodo.org/record/10115140">http://zenodo.org/record/10115140</a&gt