Multiple introductions and onward transmission of non-pandemic HIV-1 subtype B strains in North America and Europe

Most HIV-1 subtype B infections in North America and Europe seem to have resulted from the expansion of a single pandemic lineage (B PANDEMIC) disseminated from the United States (US). Some non-pandemic subtype B strains of Caribbean origin (B CAR) may have also reached North America and Europe, but their epidemiological relevance in those regions remains largely unknown. Here we analyze a total of 20,045 HIV-1 subtype B pol sequences from the US, Canada, and Europe, to estimate the prevalence and to reconstruct the spatiotemporal dynamics of dissemination of HIV-1 B CAR strains in those regions. We find that B CAR strains were probably disseminated from the Caribbean into North America and Europe at multiple times since the early 1970s onwards. The B CAR strains reached the US, Canada and at least 16 different European countries, where they account for a very low fraction (<5%) of subtype B infections, with exception of the Czech Republic (7.7%). We also find evidence of the onward transmission of B CAR clades in the US, Canada, the Czech Republic, Germany, Italy, Spain and the UK, as well as short-distance spreading of B CAR lineages between neighboring European countries from Central and Western Europe, and long-distance dissemination between the US and Europe

TDDFT-Based Study on the Proton-DNA Collision

The interaction of heavy charged particles with DNA is of interest for hadrontherapy and the aerospace industry. Here, a time-dependent density functional theory study on the interaction of a 4 keV proton with an isolated DNA base pair (bp) was carried out. Ehrenfest dynamics was used to study the evolution of the system up to about 193 fs. It was observed that the dissociation of the target occurs between 80 and 100 fs. The effect of bp linking to the DNA double helix was emulated by fixing the four O3′ atoms responsible for the attachment. The bp tends to dissociate into its main components, namely, the phosphate groups, sugars, and nitrogenous bases. A central impact with an energy transfer of 17.9 eV only produces a base damage while keeping the backbone intact. An impact on a phosphate group with an energy transfer of about 60 eV leads to a backbone break at that site together with a base damage, and the opposite backbone site integrity is kept. As the whole system is perturbed during this collision, no atom remains passive. These results suggest that base damage accompanies all backbone breaks as the hydrogen bonds that keep bases together are much weaker that those between the other components of the DNA

Estado nutricional e produção em macieiras submetidas à aplicação de fontes de nutrientes.

A aplicação de nitrogênio (N) em pomares pode afetar o estado nutricional e a produção de macieiras. O trabalho objetivou avaliar o estado nutricional e a produção de macieiras submetidas à aplicação de fontes de N. O experimento foi conduzido em um pomar comercialno município de Urubici (SC). Em outubro de 2011 foram selecionadas as plantas e, em seguida, foram instalados os tratamentos: testemunha, sem adubação nitrogenada (T1), adubação com uréia (T2), adubação com uréia peletizada (T3) e adubação com cama sobreposta de suínos (T4). Nas safras, 2011/2012 e 2012/2013 foram mensurados o teor de N total nas folhas completas, parâmetros de crescimento e a produtividade. A aplicação de N não afetou os teores de N total nas folhas, o crescimento e a produtividade das plantas na primeira safra avaliada. Na segunda safra a aplicação de N, independente da fonte utilizada, aumentou o número de frutos por planta e, consequentemente, a produção por planta e por hectare.Resumo expandido

A smart and sustainable future for viticulture is rooted in soil: How to face cu toxicity

In recent decades, agriculture has faced the fundamental challenge of needing to increase food production and quality in order to meet the requirements of a growing global population. Similarly, viticulture has also been undergoing change. Several countries are reducing their vineyard areas, and several others are increasing them. In addition, viticulture is moving towards higher altitudes and latitudes due to climate change. Furthermore, global warming is also exacerbating the incidence of fungal diseases in vineyards, forcing farmers to apply agrochemicals to preserve production yields and quality. The repeated application of copper (Cu)-based fungicides in con-ventional and organic farming has caused a stepwise accumulation of Cu in vineyard soils, posing environmental and toxicological threats. High Cu concentrations in soils can have multiple impacts on agricultural systems. In fact, it can (i) alter the chemical-physical properties of soils, thus com-promising their fertility; (ii) induce toxicity phenomena in plants, producing detrimental effects on growth and productivity; and (iii) affect the microbial biodiversity of soils, thereby influencing some microbial-driven soil processes. However, several indirect (e.g., management of rhizosphere processes through intercropping and/or fertilization strategies) and direct (e.g., exploitation of vine resistant genotypes) strategies have been proposed to restrain Cu accumulation in soils. Furthermore, the application of precision and smart viticulture paradigms and their related technologies could allow a timely, localized and balanced distribution of agrochemicals to achieve the required goals. The present review highlights the necessity of applying multidisciplinary approaches to meet the requisites of sustainability demanded of modern viticulture

Lixiviação e volatilização de nitrogênio em um Argissolo cultivado com videira submetida à adubação nitrogenada.

O nitrogênio (N) aplicado na superfície do solo em vinhedos pode ser perdido por volatilização ou lixiviação, sendo uma das possíveis explicações para o baixo aproveitamento de N pelas videiras. O trabalho objetivou avaliar as perdas de N por volatilização e lixiviação do N mineral em solo cultivado com videira submetida à adubação nitrogenada. Foram instalados dois experimentos em um vinhedo de Cabernet Sauvignon, em Rosário do Sul (RS), Brasil. No experimento 1, foram instalados lisímetros no solo que recebeu a aplicação de 0, 40, 80 e 120kg de N ha-1 ano-1 na forma de ureia e, durante o período de agosto a dezembro de 2009, foi coletada a solução do solo para a análise de N mineral. No experimento 2, foram instaladas câmaras coletoras no solo que recebeu, em agosto de 2010, a aplicação de 0, 20, 40, e 80kg de N ha-1 ano-1 na forma de ureia, 40kg de N ha-1 ano-1 de composto orgânico e 40kg de N ha-1 ano-1 de ureia revestida com polímeros, para avaliar a volatilização de N-NH3 do momento da aplicação até 80 horas depois da aplicação. As maiores concentrações de nitrogênio mineral na solução lixiviada foram encontradas nas doses mais elevadas de fertilizante mineral aplicado e ao longo da brotação e florescimento das videiras, o que pode diminuir o aproveitamento do nutriente pelas plantas. Os maiores fluxos e perdas de amônia do solo cultivado com videira para a atmosfera aconteceram nas doses mais elevadas de nitrogênio mineral aplicado, especialmente, depois de 44 horas da sua aplicação sobre a superfície do solo. A aplicação de ureia revestida com polímeros e composto orgânico promoveram as menores perdas de amônia por volatilização, o que pode estimular o aproveitamento de nitrogênio pelas videiras