Modelling Reveals Kinetic Advantages of Co-Transcriptional Splicing

Messenger RNA splicing is an essential and complex process for the removal of intron sequences. Whereas the composition of the splicing machinery is mostly known, the kinetics of splicing, the catalytic activity of splicing factors and the interdependency of transcription, splicing and mRNA 3′ end formation are less well understood. We propose a stochastic model of splicing kinetics that explains data obtained from high-resolution kinetic analyses of transcription, splicing and 3′ end formation during induction of an intron-containing reporter gene in budding yeast. Modelling reveals co-transcriptional splicing to be the most probable and most efficient splicing pathway for the reporter transcripts, due in part to a positive feedback mechanism for co-transcriptional second step splicing. Model comparison is used to assess the alternative representations of reactions. Modelling also indicates the functional coupling of transcription and splicing, because both the rate of initiation of transcription and the probability that step one of splicing occurs co-transcriptionally are reduced, when the second step of splicing is abolished in a mutant reporter

Novel hydrothermal carbonization of cellulose catalyzed by montmorillonite to produce kerogen-like hydrochar

The conversion of cellulose to petroleum-like fuel is a very challenging yet attractive route to developing biomass-to-fuel technology. Many attempts have been made in liquefaction, pyrolysis and gasification of cellulose to produce fuels or intermediate chemicals. Previous studies indicate that these processes are tough. Hence, the present work is concerned with the development of new technologies for the conversion of cellulose into materials which are analogies to the precursor of petroleum. Montmorillonite-catalyzed hydrothermal carbonization of microcrystalline cellulose for the production of kerogen-like hydrochar under mild conditions was investigated. It was revealed that the hydrothermal carbonization of microcrystalline cellulose alone resulted in hydrochar with type III kerogen-like structure, whereas in the presence of montmorillonite, the hydrothermal carbonization of microcrystalline cellulose yielded a hydrochar-mineral complex, of which the isolated organic fraction was oil-prone type II kerogen-like structure. Results suggested that further improved montmorillonite-aided biomass conversion to more oil-prone kerogen-like solid products could be an alternative efficient route to obtain biofuel and chemicals