Characterization of Parallel β-Sheets at Interfaces by Chiral Sum Frequency Generation Spectroscopy

Characterization of protein secondary structures at interfaces is still challenging due to the limitations of surface-selective optical techniques. Here, we address the challenge of characterizing parallel β-sheets by combining chiral sum frequency generation (SFG) spectroscopy and computational modeling. We focus on human islet amyloid polypeptide aggregates and a de novo designed short polypeptide at lipid/water and air/glass interfaces. We find that parallel β-sheets adopt distinct orientations at various interfaces and exhibit characteristic chiroptical responses in the amide I and N–H stretch regions. Theoretical analysis indicates that the characteristic chiroptical responses provide valuable information on the symmetry, orientation, and vibrational couplings of parallel β-sheet at interfaces

Beyond Local Group Modes in Vibrational Sum Frequency Generation

We combine deuterium labeling, density functional theory calculations, and experimental vibrational sum frequency generation spectroscopy into a form of “counterfactual-enabled molecular spectroscopy” for producing reliable vibrational mode assignments in situations where local group mode approximations are insufficient for spectral interpretation and vibrational mode assignments. We demonstrate the method using <i>trans</i>-β-isoprene epoxydiol (<i>trans</i>-β-IEPOX), a first-generation product of isoprene relevant to atmospheric aerosol formation, and one of its deuterium-labeled isotopologues at the vapor/silica interface. We use our method to determine that the SFG responses that we obtain from <i>trans</i>-β-IEPOX are almost exclusively due to nonlocal modes involving multiple C–H groups oscillating at the same frequency as one vibrational mode. We verify our assignments using deuterium labeling and use DFT calculations to predict SFG spectra of additional isotopologues that have not yet been synthesized. Finally, we use our new insight to provide a viable alternative to molecular orientation analysis methods that rely on local mode approximations in cases where the local mode approximation is not applicable

Surface-Induced Anisotropic Binding of a Rhenium CO₂‑Reduction Catalyst on Rutile TiO₂(110) Surfaces

Vibrational sum frequency generation (SFG) spectroscopy has been utilized to study the spatial orientation and alignment of Re­(CO)₃Cl­(dcbpy) (dcbpy = 4,4′-dicarboxy-2,2′-bipyridine) (or ReC0A) on the (001) and (110) surfaces of rutile single-crystalline TiO₂. The SFG intensity of the CO stretching modes shows an isotropic distribution on the (001) surface and an anisotropic distribution on the (110) surfaces with respect to the in-plane rotation of the crystal relative to the surface normal (or the incident laser beam plane). By combining these results with ab initio SFG simulations and with modeling of ReC0A–TiO₂ cluster binding structures at the density functional theory level, we reveal that the origin of the optical anisotropy for ReC0A on the TiO₂(110) surface is associated with the binding preference of ReC0A along the [−110] axis. Along this direction, the binding structure is energetically favorable, because of the formation of proper hydrogen bonding between the carboxylate group and passivating water molecules adsorbed on the TiO₂(110) surface. Simulations of dimers of ReC0A molecules binding close together with full nearest-neighbor effects give a structure that reproduces the experimental SFG polar plot. The tilt angle, defined by the bpy ring angle relative to the surface normal, of the catalyst is found to be 26° for one monomer and 18° for the other, which corresponds to an aggregate at high surface coverage

Assessment of DFT for Computing Sum Frequency Generation Spectra of an Epoxydiol and a Deuterated Isotopologue at Fused Silica/Vapor Interfaces

We assess the capabilities of eight popular density functional theory (DFT) functionals, in combination with several basis sets, as applied to calculations of vibrational sum frequency generation (SFG) spectra of the atmospherically relevant isoprene oxidation product <i>trans</i>-β-isoprene epoxydiol (IEPOX) and one of its deuterated isotopologues at the fused silica/vapor interface. We use sum of squared differences (SSD) and total absolute error (TAE) calculations to estimate the performance of each functional/basis set combination in producing SFG spectra that match experimentally obtained spectra from <i>trans</i>-β-IEPOX and one of its isotopologues. Our joined SSD/TAE analysis shows that while the twist angle of the methyl <i>C</i>_3<i>v</i> symmetry axis of <i>trans</i>-β-IEPOX relative to the surface is sensitive to the choice of DFT functional, the calculated tilt angle relative to the surface normal is largely independent of the functional and basis set. Moreover, we report that hybrid functionals such as B3LYP, ωB97X-D, PBE0, and B97-1 in combination with a modest basis set, such as 6-311G­(d,p), provides good agreement with experimental data and much better performance than pure functionals such as PBE and BP86. However, improving the quality of the basis set only improves agreement with experimental data for calculations based on pure functionals. A conformational analysis, based on comparisons of calculated and experimental SFG spectra, suggests that <i>trans</i>-β-IEPOX points all of its oxygen atoms toward the silica/vapor interface

Sum Frequency Generation Spectroscopy and Molecular Dynamics Simulations Reveal a Rotationally Fluid Adsorption State of α‑Pinene on Silica

A rotationally fluid state of α-pinene at fused silica/vapor interfaces is revealed by computational and experimental vibrational sum frequency generation (SFG) studies. We report the first assignment of the vibrational modes in the notoriously congested C–H stretching region of α-pinene and identify its bridge methylene group on the four-membered ring (“^βCH₂”) as the origin of its dominant spectral feature. We find that the spectra are perfused with Fermi resonances that need to be accounted for explicitly in the computation of vibrational spectra of strained hydrocarbons such as α-pinene. The preferred orientations of α-pinene are consistent with optimization of van der Waals contacts with the silica surface that results in a bimodal distribution of highly fluxional orientations in which the ^βCH₂ group points “towards” or “away from” the surface. Classical molecular dynamics simulations further provide rotational diffusion constants of 49 ± 1 ps and 2580 ± 60 ps, which are attributed to two broad types of adsorption modes on silica. The reported findings are particularly relevant to the exposure of α-pinene to primary oxidants in heterogeneous catalytic pathways that exploit α-pinene as a sustainable feedstock for fine chemicals and polymers

Orientation of Cyano-Substituted Bipyridine Re(I) <i>fac</i>-Tricarbonyl Electrocatalysts Bound to Conducting Au Surfaces

Sum frequency generation spectroscopy (SFG) and calculations of SFG spectra based on density functional theory are combined to elucidate the orientation of two Re­(R-2,2′-bipyridine)­(CO)₃Cl (R = 4-cyano or 4,4′-dicyano) electrocatalysts when adsorbed on conductive gold surfaces. We find that the electrocatalysts lean on the Au surface to orient the plane of the bipyridine ligand at 63° relative to the surface normal. While the weak binding of the complexes to the gold surface precluded the ability to perform surface immobilized catalysis, homogeneous electrochemical experiments show that the molecular catalysts are active toward the reduction of CO₂ to CO and carbonate in the triply reduced state (TOF of 13.3 and 7.2 s^–1 for the doubly and singly substituted complexes, respectively). These findings demonstrate the capabilities of the approach of including rigorous spectroscopic and theoretical methods for revealing the conformation and orientation of CO₂ reduction catalysts bound to electrode surfaces, which are critical considerations for redox state transitions and catalytic turnover

Accurate Line Shapes from Sub‑1 cm^–1 Resolution Sum Frequency Generation Vibrational Spectroscopy of α‑Pinene at Room Temperature

Despite the importance of terpenes in biology, the environment, and catalysis, their vibrational spectra remain unassigned. Here, we present subwavenumber high-resolution broad-band sum frequency generation (HR-BB-SFG) spectra of the common terpene (+)-α-pinene that reveal 10 peaks in the C–H stretching region at room temperature. The high spectral resolution resulted in spectra with more and better resolved spectral features than those of the Fourier transform infrared, femtosecond stimulated Raman spectra in the bulk condensed phase and those of the conventional BB-SFG and scanning SFG spectroscopy of the same molecule on a surface. Experiment and simulation show the spectral line shapes with HR-BB-SFG to be accurate. Homogeneous vibrational decoherence lifetimes of up to 1.7 ps are assigned to specific oscillators and compare favorably to lifetimes computed from density functional tight binding molecular dynamics calculations. Phase-resolved spectra provided their orientational information. We propose the new spectroscopy as an attractive alternative to time domain vibrational spectroscopy or heterodyne detection schemes for studying vibrational energy relaxation and vibrational coherences in molecules at molecular surfaces or interfaces