An overview of the living marine resources of Namibia

This paper gives an overview of the main living marine resources of Namibia. It focuses on the scientific research conducted during the past decade as input to the management of these resources. The distribution and habitats of the most important harvested species and the main seabird populations are briefly described and discussed. The life histories of the major exploited species are summarized, with emphasis on spatial and temporal spawning patterns, dispersal of early life stages, migration patterns of recruits and adults, and diet, the latter particularly as it relates to potential competition between species. A number of commercially important species, such as the hake Merluccius capensis and M. paradoxus, deep-sea red crab Chaceon maritae, West Coast rock lobster Jasus lalandii, skipjack tuna Katsuwonus pelamis, southern albacore Thunnus alalunga and to a lesser extent Cape horse mackerel Trachurus capensis, southern African sardine Sardinops sagax and Cape anchovy Engraulis capensis, are distributed across national boundaries, requiring regional cooperation in research and management. The history and current status of the major fisheries is discussed. Over the past 30–40 years total annual catches have declined from a peak of around 2 million tons in the late 1960s to less than a million tons in the 1990s. This decline has been due, mainly, to a collapse in the sardine stock in the late 1960s and 1970s, and a reduction in the catches of hake and horse mackerel under a conservative management strategy in the past decade. Changes in the abundance and distribution of commercially important species, as determined by acoustic and trawl surveys and catch-based analytical methods, are presented. The effect of major environmental anomalies on the distribution and abundance of the resources in recent years is discussed. The most dramatic anomaly in recent years was the wide-scale advection of low-oxygen water into the northern Benguela from the Angola Dome in 1994, and the subsequent Benguela Niño of 1995, which appear to have severely impacted the Namibian sardine population and many other resources. The present socio-economic value of the Namibian fishing industry is given together with the broad policy, legislation and formal structures for managing the living marine resources.Keywords: Benguela, exploitation, fisheries, management, marine resources, NamibiaAfrican Journal of Marine Science 2001, 23: 5–3

Development of acoustic techniques for assessment of orange roughy Hoplostethus atlanticus biomass off Namibia, and of methods for correcting for bias

Orange roughy form dense spawning aggregations in specific small areas in deep water on the Namibian shelf between late June and early August each year. The biomass in three such areas, where most commercial fishing occurs (the Johnies, Frankies and Rix Quota Management Areas, or QMAs) has been assessed acoustically each year since 1997. Acoustic estimates of the aggregated portion of the biomass (the only component that can be assessed reliably using acoustics) were obtained for all three QMAs in 1997 and 1998, but only for Frankies in 1999 owing to increased problems with target identification as the biomass declined. The methodology developed for these surveys, including the equipment used, survey design, target identification, data processing and error analysis are described. Some important biases that should be corrected for when estimating absolute abundance of orange roughy acoustically are addressed. Individual sources of error were quantified as well as possible, and input to an error model that simulated the error process and produced probability density functions of absolute biomass, from which the mean absolute biomass and its standard error could be computed for each survey, effectively correcting for identified sources of bias and quantifying the overall uncertainty. The correction factors ranged from 1.58 to 1.71 and the CVs increased by factors of 1.2–2.1. Target strength uncertainty and negative bias attributable to the dead zone close to the bottom were considered to be the most serious errors. The acoustic estimates indicate a substantial decline in orange roughy biomass in all three QMAs since 1997, in accord with indices from contemporaneous swept-area surveys and the catch rate of the commercial fleet. Acoustic estimates have already been used extensively to manage the resource and are likely to remain important in the future. Keywords: acoustics, deep-water fisheries, orange roughy, surveyAfrican Journal of Marine Science 2001, 23: 223–24

Changes in abundance of the northern Benguela sardine stock during the decade 1990 &#150 2000, with comments on the relative importance of fishing and the environment

The northern Benguela stock of sardine Sardinops sagax used to be considered one of the major clupeoid stocks of the world; it supported an average annual catch of >700 000 tons throughout the 1960s. The stock has been in a depressed state for more than two decades, as demonstrated by annual catches that averaged around 50 000 tons between 1978 and 1989 and only slightly more in the 1990s. It has experienced fluctuations in abundance of several orders of magnitude during the most recent decade. Population size increased until 1992, when the acoustic estimate of biomass was about 750 000 tons. Catches increased accordingly, averaging 100 000 tons between 1992 and 1995, but from 1992 to 1996 the stock was in decline and the lowest annual catch in the history of the fishery was taken in 1996. Although there was a small increase during the last three years of the decade, the stock remains seriously depleted. Survey-based recruitment indices suggest that the changes in the 1990s were initiated by fluctuations in recruitment, but the decline was almost certainly exacerbated by continued fishing. Poor recruitment and decreasing catch rates between 1993 and 1996 in a number of other key resources suggest that system-wide environmental changes were an important factor in the decline of the sardine stock at that time. Anomalous oceanographic conditions, such as extensive hypoxic shelf waters in 1993/94 and a Benguela Niño in 1995, support this conclusion.Keywords: environmental effects, fishing effects, northern Benguela, recruitment, sardineAfrican Journal of Marine Science 2001, 23: 67–8

Changes in some key biological parameters of the northern Benguela sardine stock

During the past 50 years, more than 15 million tons of sardine have been harvested from the northern Benguela ecosystem. The sardine population has undergone changes in abundance estimated to range over more than two orders of magnitude, but for the past two decades it is estimated to have remained at less than 10% of former levels of abundance. Some key changes in biological parameters, notably age composition and rates of natural mortality, are discussed in relation to the changes in abundance. Literature values for the period before the 1990s are compared to values calculated from acoustic survey population estimates thereafter. Although these recent data are potentially biased, and often lack estimates of precision, it is argued that they are sufficient to demonstrate general trends. The likelihood of the sardine stock recovering is seemingly reduced owing to the recent high rate of adult natural mortality.Keywords: biological parameters, exploitation, mortality, northern Benguela, sardine, Sardinops sagaxAfrican Journal of Marine Science 2001, 23: 111–12

The diurnal vertical dynamics of cape hake and their potential prey

The Cape hakes Merluccius capensis and M. paradoxus are dominant predators over the Namibian shelf. They are found in a water column that includes myctophids and other mesopelagic fish, euphausiids andcephalopods. Together with their cohabitant potential prey, hake are known to undertake diurnal vertical migrations, aggregating near the bottom during daylight, but migrating off the bottom at night. An attempt to determine the underlying mechanisms of this diurnal migration by means of underwater acoustics and trawling was made at a single location on the central Namibian shelf at a depth of 350 m during four consecutive days in April 1996. Large M. capensis, 50–75 cm total length, dominated just over the sea bed, whereas 30–40 cm M. paradoxus were most abundant 5–50 m off the bottom, suggesting that the smaller M. paradoxus had to remain higher in the water column to avoid being eaten by the larger M. capensis. Large hake of both species preyed preferentially on fish, whereas the smaller hake preferred euphausiids, although there was some evidence of euphausiid consumption by most hake. There was no distinct daily feeding rhythm in either species of hake, although there was some evidence of evening predation dominating. This may indicate a feeding strategy where vision is not important

Intrusion of warm surface water along the Angolan Namibian Coast in February–March 1995: the 1995 Benguela niño

The upper ocean temperatures in the Angolan-Namibian coastal waters were anomalously high during March 1995, with positive temperature anomalies of up to 8°C. Maximum temperature differences were30–50 m deep, reflecting a deepening of the thermocline from normal depths of 10–30 m. The unusually warm water mass covered the Angolan coast from Cabinda (5°S), the northern limit of the survey area, to atleast 24°S off central Namibia. Higher than normal temperatures were observed as far south as Lüderitz (27°S). Satellite-derived SST and direct observations indicated that the seaward distribution of warm waterextended more than 300 km from the coast. Surface drogues released inshore along the central Namibian shelf suggested a maximum southward extension by 3 March 1995. The warm event was associated withobserved mortalities in sardine Sardinops sagax, horse mackerel Trachurus trachurus capensis and kob Argyrosomus inodorus off the coast. It also caused a southward displacement of sardine stocks from Angola,resulting in an increased availability of pelagic fish in Namibian waters. Conditions have occasionally been anomalously warm in Angolan and Namibian waters in the past, with the last major event in 1984. Theseevents are known as Benguela Niños, because of their resemblance to the well known Pacific El Niño. The 1995 Benguela Niño appeared to be associated with a positive subsurface salinity anomaly of 0.5 × 10–3 inNamibian waters and a negative (-4.0 × 10–3) surface salinity anomaly in Angolan waters, thought to be derived from the freshwater input of the Congo River

The orange roughy fishery of Namibia: lessons to be learned about managing a developing fishery

Exploration for orange roughy Hoplostethus atlanticus in Namibia started in 1994 and within 12 months several aggregations had been discovered, suggesting the existence of a biomass sufficient to support a viable fishery. At that early stage it was realized that few, if any, recognized management procedures existed for newly developing fisheries, especially with the paucity of data such as existed on Namibian orange roughy. The development of the Namibian orange roughy fishery is reviewed to document the management strategies implemented and how the management of the fishery evolved. The first six years of the fishery are described, including the three-year exploration phase, several years of profitable exploitation, and the severe decline in catch rates. Whether the decline is attributable to fishing mortality or to change in the aggregating behaviour of orange roughy, or both, is not clear. Although many aspects of the precautionary approach were followed, a risk analysis applied and a number of innovative management methods implemented (e.g. incentives to promote exploratory fishing, use of Bayesian statistical methods, implementation of a management plan for long-term total allowable catches), the aggregating biomass declined to between 10 and 50% of virgin levels within the six years. The management methods applied are evaluated in the light of the severe decline in catch rate experienced in 1998 and 1999, so that others may learn from the experience.Keywords: assessment, management, Namibia, orange roughy, uncertaintyAfrican Journal of Marine Science 2001, 23: 205–22

Single-stranded genomic architecture constrains optimal codon usage

Viral codon usage is shaped by the conflicting forces of mutational pressure and selection to match host patterns for optimal expression. We examined whether genomic architecture (single- or double-stranded DNA) influences the degree to which bacteriophage codon usage differ from their primary bacterial hosts and each other. While both correlated equally with their hosts' genomic nucleotide content, the coat genes of ssDNA phages were less well adapted than those of dsDNA phages to their hosts' codon usage profiles due to their preference for codons ending in thymine. No specific biases were detected in dsDNA phage genomes. In all nine of ten cases of codon redundancy in which a specific codon was overrepresented, ssDNA phages favored the NNT codon. A cytosine to thymine biased mutational pressure working in conjunction with strong selection against non-synonymous mutations appears be shaping codon usage bias in ssDNA viral genomes

Identification of novel modifiers of Aβ toxicity by transcriptomic analysis in the fruitfly.

The strongest risk factor for developing Alzheimer's Disease (AD) is age. Here, we study the relationship between ageing and AD using a systems biology approach that employs a Drosophila (fruitfly) model of AD in which the flies overexpress the human Aβ42 peptide. We identified 712 genes that are differentially expressed between control and Aβ-expressing flies. We further divided these genes according to how they change over the animal's lifetime and discovered that the AD-related gene expression signature is age-independent. We have identified a number of differentially expressed pathways that are likely to play an important role in the disease, including oxidative stress and innate immunity. In particular, we uncovered two new modifiers of the Aβ phenotype, namely Sod3 and PGRP-SC1b

Development of a decision aid to inform patients' and families' renal replacement therapy selection decisions.

BACKGROUND: Few educational resources have been developed to inform patients' renal replacement therapy (RRT) selection decisions. Patients progressing toward end stage renal disease (ESRD) must decide among multiple treatment options with varying characteristics. Complex information about treatments must be adequately conveyed to patients with different educational backgrounds and informational needs. Decisions about treatment options also require family input, as families often participate in patients' treatment and support patients' decisions. We describe the development, design, and preliminary evaluation of an informational, evidence-based, and patient-and family-centered decision aid for patients with ESRD and varying levels of health literacy, health numeracy, and cognitive function. METHODS: We designed a decision aid comprising a complementary video and informational handbook. We based our development process on data previously obtained from qualitative focus groups and systematic literature reviews. We simultaneously developed the video and handbook in "stages." For the video, stages included (1) directed interviews with culturally appropriate patients and families and preliminary script development, (2) video production, and (3) screening the video with patients and their families. For the handbook, stages comprised (1) preliminary content design, (2) a mixed-methods pilot study among diverse patients to assess comprehension of handbook material, and (3) screening the handbook with patients and their families. RESULTS: The video and handbook both addressed potential benefits and trade-offs of treatment selections. The 50-minute video consisted of demographically diverse patients and their families describing their positive and negative experiences with selecting a treatment option. The video also incorporated health professionals' testimonials regarding various considerations that might influence patients' and families' treatment selections. The handbook was comprised of written words, pictures of patients and health care providers, and diagrams describing the findings and quality of scientific studies comparing treatments. The handbook text was written at a 4th to 6th grade reading level. Pilot study results demonstrated that a majority of patients could understand information presented in the handbook. Patient and families screening the nearly completed video and handbook reviewed the materials favorably. CONCLUSIONS: This rigorously designed decision aid may help patients and families make informed decisions about their treatment options for RRT that are well aligned with their values