Genome-wide analysis of canine oral malignant melanoma metastasis-associated gene expression

Abstract Oral malignant melanoma (OMM) is the most common canine melanocytic neoplasm. Overlap between the somatic mutation profiles of canine OMM and human mucosal melanomas suggest a shared UV-independent molecular aetiology. In common with human mucosal melanomas, most canine OMM metastasise. There is no reliable means of predicting canine OMM metastasis, and systemic therapies for metastatic disease are largely palliative. Herein, we employed exon microarrays for comparative expression profiling of FFPE biopsies of 18 primary canine OMM that metastasised and 10 primary OMM that did not metastasise. Genes displaying metastasis-associated expression may be targets for anti-metastasis treatments, and biomarkers of OMM metastasis. Reduced expression of CXCL12 in the metastasising OMMs implies that the CXCR4/CXCL12 axis may be involved in OMM metastasis. Increased expression of APOBEC3A in the metastasising OMMs may indicate APOBEC3A-induced double-strand DNA breaks and pro-metastatic hypermutation. DNA double strand breakage triggers the DNA damage response network and two Fanconi anaemia DNA repair pathway members showed elevated expression in the metastasising OMMs. Cross-validation was employed to test a Linear Discriminant Analysis classifier based upon the RT-qPCR-measured expression levels of CXCL12, APOBEC3A and RPL29. Classification accuracies of 94% (metastasising OMMs) and 86% (non-metastasising OMMs) were estimated

Measurement of bitumen viscosity in the room-temperature drop experiment: student education, public outreach and modern science in one

Slow flow of the viscous liquid is a thought-provoking experiment that challenges students, academics and public to think about some fundamental questions in modern science. In the Queensland demonstration, the world-longest running experiment earning the Ig Nobel prize, one drop of pitch takes about 10 years to fall, leading to problems of actually observing the drops. Here, we describe our recent demonstration of slowly-flowing bitumen where appreciable flow is observed on the time scale of months. The experiment is free from dissipative heating effects and has the potential to improve the accuracy of measurement. Bitumen viscosity was calculated by undergraduate students during the summer project. The worldwide access to the running experiment is provided by webcams uploading the images to a dedicated website, enhancing student education experience and promotion of science. This demonstration serves as an attractive student education exercise and stimulates the discussion of fundamental concepts and hotly debated ideas in modern physics research: difference between solids and liquids, the nature of liquid-glass transition, emergence of long time scales in a physical process, and the conflict between human intuition and physical reality