The characterization of a new set of EST-derived simple sequence repeat (SSR) markers as a resource for the genetic analysis of Phaseolus vulgaris

<p>Abstract</p> <p>Background</p> <p>Over recent years, a growing effort has been made to develop microsatellite markers for the genomic analysis of the common bean (<it>Phaseolus vulgaris</it>) to broaden the knowledge of the molecular genetic basis of this species. The availability of large sets of expressed sequence tags (ESTs) in public databases has given rise to an expedient approach for the identification of SSRs (Simple Sequence Repeats), specifically EST-derived SSRs. In the present work, a battery of new microsatellite markers was obtained from a search of the <it>Phaseolus vulgaris </it>EST database. The diversity, degree of transferability and polymorphism of these markers were tested.</p> <p>Results</p> <p>From 9,583 valid ESTs, 4,764 had microsatellite motifs, from which 377 were used to design primers, and 302 (80.11%) showed good amplification quality. To analyze transferability, a group of 167 SSRs were tested, and the results showed that they were 82% transferable across at least one species. The highest amplification rates were observed between the species from the <it>Phaseolus </it>(63.7%), <it>Vigna </it>(25.9%), <it>Glycine </it>(19.8%), <it>Medicago </it>(10.2%), <it>Dipterix </it>(6%) and <it>Arachis </it>(1.8%) genera. The average PIC (Polymorphism Information Content) varied from 0.53 for genomic SSRs to 0.47 for EST-SSRs, and the average number of alleles per locus was 4 and 3, respectively. Among the 315 newly tested SSRs in the BJ (BAT93 X Jalo EEP558) population, 24% (76) were polymorphic. The integration of these segregant loci into a framework map composed of 123 previously obtained SSR markers yielded a total of 199 segregant loci, of which 182 (91.5%) were mapped to 14 linkage groups, resulting in a map length of 1,157 cM.</p> <p>Conclusions</p> <p>A total of 302 newly developed EST-SSR markers, showing good amplification quality, are available for the genetic analysis of <it>Phaseolus vulgaris</it>. These markers showed satisfactory rates of transferability, especially between species that have great economic and genomic values. Their diversity was comparable to genomic SSRs, and they were incorporated in the common bean reference genetic map, which constitutes an important contribution to and advance in <it>Phaseolus vulgaris </it>genomic research.</p

Non-neoplastic bulky mediastinal mass presentation in an adolescent patient: a case report

Abstract : Introduction Mediastinal masses in pediatric patients are very heterogeneous in origin and etiology. In the first decade of life, 70% of the mediastinal masses are benign whereas malignant tumors are more frequent in the second decade of life. Among the mediastinal masses, lymph nodes are the most common involved structures and could be enlarged due to a lymphoma, leukemia, metastatic disease, or due to infectious diseases as sarcoidosis, tuberculosis and others. Case presentation. We report a case of a 13-year-old Caucasian girl who came to the emergency room with a history of intermittent fever, weight loss and night sweating for at least 1 month. A radiologic image work-up presented an anterior and posterior mediastinal mass. The 18F-fluorodeoxyglucose positron emission tomography presented a high maximum standard uptake value, which directed our decision for mediastinal biopsy for diagnostic elucidation. Histologic examination described the mass as granulomatous tuberculosis. The patient was treated with anti-tuberculosis therapy and developed a full clinical recovery. Conclusions . The present case report demonstrates that a bulky mediastinal lymphadenopathy detected on 18F-fluorodeoxyglucose positron emission tomography is not always a malignant lesion, and in countries where tuberculosis is endemic, this etiology should not be forgotten during clinical investigations. There is a need for more accurate cut-off values for this technology; meanwhile, the further investigation of patients with bulky mediastinal masses with procedures such as the open biopsy is indispensable

Factors influencing results of peripheral hematologic progenitor cells harvesting in children with advanced Neuroblastoma

Objetivos: Avaliar os resultados das coletas de células hematopoéticas CD34+, por aférese, em crianças portadoras de neuroblastoma tratadas no Serviço de Oncologia e Hematologia do Instituto da Criança do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo; estudar os fatores (idade, peso, estimulação com quimioterapia, dose do G-CSF, uso terapêutico de 131I-MIBG e tempo entre exposição à quimioterapia prévia) que influenciaram na mobilização e no rendimento da coleta de células CD34+ no sangue periférico e associar a quantidade de células CD34+ obtidas com a evolução clínica do paciente. Métodos: Trata-se de um estudo retrospectivo de pacientes com neuroblastoma submetidos à coleta de células-tronco hematopoéticas entre janeiro de1989 e junho 2012. Resultados: Avaliados 45 prontuários de crianças com idade mediana de 3,1 anos (0-12 anos), 26 (57%) apresentavam metástase em medula óssea ao diagnóstico. O tempo entre diagnóstico e o início da mobilização foi em média 19,7 ± 12 meses (mediana de 15,8 meses). Dos pacientes estudados, 11/45 (24,4%) receberam 131I-MIBG terapêutico antes da mobilização. Somente cinco pacientes (11,1%) receberam quimioterapia associada ao G-CSF para mobilização; as demais 40 crianças (88,9%) receberam exclusivamente G-CSF na dose média 26,5 ± 5,3 ug/kg/dia (mediana 28 ug/kg/dia). Não houve correlação entre o número máximo de células CD34+ no sangue periférico com a idade (p=0,9), com o peso (p=0,63), com a dose do G-CSF (p=0,46) ou com o intervalo entre o diagnóstico e o início da mobilização (p=0,09). A mediana da quantificação de células CD34+/uL no sangue periférico foi de 36,6 células, média de 45,2 ± 42,6 (mínimo 1,7 e máximo 236,3). Pacientes que haviam recebido 131I-MIBG previamente à mobilização apresentaram menor número de células CD34+/uL no sangue periférico (p=0,04). Em 26 pacientes (57,8%) foi possível coletar mais de 2,0x106 células CD34+/Kg na primeira coleta e em 19 pacientes (42,2%) foram necessárias mais de uma coleta, sendo que, oito pacientes (17,8%) apresentaram falha de mobilização. Os pacientes que apresentaram menor quantidade de células CD34+/uL no sangue periférico (<= 12) não conseguiram número maior ou igual a 2,0x106 células CD34+/Kg em 81,8% das coletas. O número mediano de células infundidas foi de 2,66 x106 células CD34+/Kg (média 3,38 ±1,6; mínimo 1,8; máximo 8,74 x106 CD34+/Kg). Os pacientes apresentaram contagem de leucócitos maior que 1000/mm3 e de plaquetas maior 50000/mm3 por dois dias consecutivos em média, no dia 13 ± 10 e no dia 46 ± 33, respectivamente, após infusão. Conclusões: A coleta de células-tronco hematopoéticas por aférese foi factível em todos os pacientes do estudo. Não houve influência significativa da idade, do peso, da dose do G-CSF e do tempo entre diagnóstico e inicio da mobilização, no número máximo de células. O uso prévio à coleta de 131I-MIBG terapêutico parece influenciar negativamente no pico de células CD34+ no sangue periférico (p=0,04). A contagem de células CD34+ no sangue periférico é importante fator preditivo do resultado das coletas de células progenitoras hematopoéticas CD34+ por aféreseObjectives: To evaluate the results of peripheral hematopoietic CD34+ stem cells harvesting in children with neuroblastoma treated at Serviço de Oncologia e Hematologia do Instituto da Criança do Hospital das Clínicas da Faculdade de Medicina da Universidade de São Paulo; regarding age, weight, stimulation with chemotherapy, G-CSF dose, time between diagnosis and the mobilization beginning and therapeutic 131I-MIBG use and the influence in mobilization and peripheral harvesting of autologous hematopoietic stem cells and to associate the amount of CD34+ cells obtained with the patient\'s clinical evolution. Methods: Between January 1989 and June 2012, children with neuroblastoma underwent to mobilization and peripheral hematopoietic stem cell harvesting and were retrospectively analyzed. Results: The charts of 45 children were reviewed. Median age was 3.1 years (0-12years), and 26 (57%) had metastases in bone marrow at diagnosis. Average time between diagnosis and mobilization was 19.7 ± 12 months (median, 15.8 months). 11/45 (24.4%) received therapeutic 131I-MIBG prior to mobilization. The average G-CSF dose was 26.5 ± 5.3mg/kg/day (mean 28mg/kg/day). There was no correlation between the absolute number of peripheral CD34+ cells and age (p=0.9), weight (p=0.63), G-CSF dose (p=0.46) or the range between diagnosis and early mobilization (p=0.09). The median quantification of CD34+ cells/uL in peripheral blood was 36.6, average 45.2 ±42.6 (minimum 1.7 and maximum 236.3 CD34+ cells/uL). Patients who had received therapeutic 131I-MIBG prior to mobilization, showed fewer absolute amount of CD34+/uL cells in peripheral blood (p=0.04). In 26 patients (57.8%) it was possible to harvest more than 2.0 x106 CD34+ cells/kg at first apheresis and in 19 patients (42.2%) more than one collection were necessary, and eight patients (17.8 %) failure to mobilize. Patients presenting less than 12 CD34+ cells/uL in peripheral blood on the harvesting day failed to reach more then 2.0x106 cells CD34+/kg in 81.8% of the apheresis procedures. It was infused a median number of 2.66 x106 CD34+ cells/kg (mean 1.6 ± 3.38; min 1.8; max 8.74 x106 CD34+ cells/kg). After the stem cells infusion, patients had white blood cells count greater than 1000/mm3 and platelet greater than 50,000/mm3 for two consecutive days on average after 13 ±10 and 46 ± 33 days, respectively. Conclusions: The hematopoietic stem cells harvesting was feasible in all patients included in this report. The G-CSF dose, age, weight and the period between harvesting and diagnosis showed no influence in mobilization and harvesting of autologous hematopoietic stem cells, however the absolute number of peripheral blood CD34+ cells/uL is an important predictive factor for the harvesting outcome. Additionally our findings support for the first time the notion that the use of therapeutic 131I-MIBG could have a negative impact in mobilization of peripheral blood stem cells in children with neuroblastom

Simultaneous Occurrence of Biphenotypic T Cell/Myeloid Lesions Involving t(12;13)(p13;q14) in a Pediatric Patient

This paper chronicles a 2-year-old girl who presented with acute leukemia/lymphoma syndrome of the T cell immuno-phenotype. At this time, the cytogenetic analysis of her bone marrow cells showed a reciprocal translocation between the short arm of chromosome 12 and the long arm of chromosome 13, t(12;13)(p13;q14). The immunophenotyping of bone marrow blast cells by flow cytometry revealed a population of cells positive for CD56, CD117, CD45, partial CD33, partial HLA-DR, CD13, CD7, CD2 and CD5. Therefore, a diagnosis of acute leukemia with a mixed T cell/myeloid phenotype was made. The patient had a poor response to classic T cell acute lymphocytic leukemia/lymphoma therapy; thus, her treatment was changed to a myeloid leukemia protocol, which produced a good response. She underwent a successful cord blood transplantation from an unrelated HLA partially matched donor. The coexistence of these two phenotypes prompts questions about the existence of clonal instability, which might influence the choice of therapy. The rarity of the t(12;13)(p13;q14) and the coexistence of T cell/myeloid markers suggest a nonrandom association. To the best of our knowledge, this is the first reported case in which a cell clone bearing a t(12;13)(p13;q14) translocation in a mixed T cell/myeloid lesion was detected. Copyright (C) 2012 S. Karger AG, BaselMaria Cecilia Souto Vidigal Foundation, Sao Paulo, BrazilMaria Cecilia Souto Vidigal Foundation, Sao Paulo, Brazi