Magnetic catalyst bodies

After a discussion about the importance of the size of the catalyst bodies with reactions in the liquid-phase with a suspended catalyst, the possibilities of magnetic separation are dealt with. Deficiencies of the usual ferromagnetic particles are the reactivity and the clustering of the particles. A procedure to produce more suitable magnetic particles is to deposit a nickel± iron precursor on a support and to obtain small metal particles by reduction. Subsequently the metal particles are encapsulated in layers of graphitic carbon by exposure to methane at 700°C. Exposure to methane at lower temperature leads to growth of carbon fibrils, which can be controlled by raising the temperature. The alumina support is dissolved in hydrochloric acid. The magnetic properties of nickel-iron alloys prevent clustering of the ferromagnetic particles

Carbon loss by water erosion in drylands: Implications from a study of vegetation change in the south-west USA

Journal ArticleSoil organic carbon (SOC) is an important component of the global carbon cycle yet is rarely quantified adequately in terms of its spatial variability resulting from losses of SOC due to erosion by water. Furthermore, in drylands, little is known about the effect of widespread vegetation change on changes in SOC stores and the potential for water erosion to redistribute SOC around the landscape especially during high-magnitude run-off events (flash floods). This study assesses the change in SOC stores across a shrub-encroachment gradient in the Chihuahuan Desert of the south-west USA. A robust estimate of SOC storage in surface soils is presented, indicating that more SOC is stored beneath vegetation than in bare soil areas. In addition, the change in SOC storage over a shrub-encroachment gradient is shown to be nonlinear and highly variable within each vegetation type. Over the gradient of vegetation change, the heterogeneity of SOC increases, and newer carbon from C3 plants becomes dominant. This increase in the heterogeneity of SOC is related to an increase in water erosion and SOC loss from inter-shrub areas, which is self-reinforcing. Shrub-dominated drylands lose more than three times as much SOC as their grass counterparts. The implications of this study are twofold: (1) quantifying the effects of vegetation change on carbon loss via water erosion and the highly variable effects of land degradation on soil carbon stocks is critical. (2) If landscape-scale understanding of carbon loss by water erosion in drylands is required, studies must characterize the heterogeneity of ecosystem structure and its effects on ecosystem function across ecotones subject to vegetation change. © 2013 John Wiley & Sons, Ltd.NS

Biotic and abiotic changes in ecosystem structure over a shrub-encroachment gradient in the southwestern USA.

publication-status: Publishedtypes: Article© 2010 Springer Verlag. This is a post print version of the article. The final publication is available at link.springer.comIn this study, we investigate changes in ecosystem structure that occur over a gradient of land-degradation in the southwestern USA, where shrubs are encroaching into native grassland. We evaluate a conceptual model which posits that the development of biotic and abiotic structural connectivity is due to ecogeomorphic feedbacks. Three hypotheses are evaluated: 1. Over the shrub-encroachment gradient, the difference in soil properties under each surface-cover type will change non-linearly, becoming increasingly different; 2. There will be a reduction in vegetation cover and an increase in vegetation-patch size that is concurrent with an increase in the spatial heterogeneity of soil properties over the shrub-encroachment gradient; and 3. Over the shrub-encroachment gradient, the range at which soil properties are autocorrelated will progressively exceed the range at which vegetation is autocorrelated. Field-based monitoring of vegetation and soil properties was carried out over a shrub-encroachment gradient at the Sevilleta National Wildlife Refuge in New Mexico, USA. Results of this study show that vegetation cover decreases over the shrub-encroachment gradient, but vegetation-patch size increases, with a concurrent increase in the spatial heterogeneity of soil properties. Typically, there are significant differences in soil properties between non-vegetated and vegetated surfaces, but for grass and shrub patches, there are only significant differences for the biotic soil properties. Results suggest that it is the development of larger, well-connected, non-vegetated patches that is most important in driving the overall behavior of shrub-dominated sites. Results of this study support the hypothesis that feedbacks of functional connectivity reinforce the development of structural connectivity, which increases the resilience of the shrub-dominated state, and thus makes it harder for grasses to re-establish and reverse the vegetation change

Comparison of the Role of 5′ Terminal Sequences of Alfalfa Mosaic Virus RNAs 1, 2, and 3 in Viral RNA Replication

AbstractThe 5′ untranslated regions (UTRs) of the genomic RNAs 1, 2, and 3 of alfalfa mosaic virus (AMV) are 100, 54, and 345 nucleotides (nt) long, respectively, and lack extensive sequence similarity to each other. RNA 3 encodes the movement protein P3 and the coat protein and can be replicated in transgenic tobacco plants expressing the replicase proteins P1 and P2 (P12 plants). 5′Cis-acting sequences involved in RNA 3 replication have been shown to be confined to the 5′ UTR. When the 5′ UTR of RNA 3 was replaced by the 5′ UTRs of RNAs 1 or 2, the recombinant RNA was not infectious to P12 plants. Also, when the P3 gene in RNA 3 was put under the control of a subgenomic promoter and the 5′ UTR of this RNA was replaced by 5′ terminal RNA 1 sequences of 103 to 860 nt long or RNA 2 sequences of 57 to 612 nt long, no accumulation of the hybrid RNAs was observed. Deletion of the 5′ 22 nucleotides of RNA 3 resulted in the accumulation of a major progeny that lacked the 5′ 79 nt. However, when the 5′ 22 nucleotides of RNA 3 were replaced by the complete 5′ UTR of RNA 1 or 5′ sequences of RNAs 1, 2, or 3 with a length of 5 to 15 nt, accumulation of the full-length mutant RNAs was observed. The effect of mutations in the 5′ viral sequences of 5 to 15 nt was analyzed. It is concluded that although elements within nucleotides 80–345 of the 5′ UTR of RNA 3 are sufficient for replication, a specific sequence of 3 to 5 nt is required to target the replicase to an initiation site corresponding to the 5′ end of the RNA

WRKY Transcription Factors Involved in Activation of SA Biosynthesis Genes

<p>Abstract</p> <p>Background</p> <p>Increased defense against a variety of pathogens in plants is achieved through activation of a mechanism known as systemic acquired resistance (SAR). The broad-spectrum resistance brought about by SAR is mediated through salicylic acid (SA). An important step in SA biosynthesis in Arabidopsis is the conversion of chorismate to isochorismate through the action of isochorismate synthase, encoded by the <it>ICS1 </it>gene. Also <it>AVR</it>_{<it>PPHB </it>}<it>SUSCEPTIBLE 3 </it>(<it>PBS3</it>) plays an important role in SA metabolism, as <it>pbs3 </it>mutants accumulate drastically reduced levels of SA-glucoside, a putative storage form of SA. Bioinformatics analysis previously performed by us identified WRKY28 and WRKY46 as possible regulators of <it>ICS1 </it>and <it>PBS3</it>.</p> <p>Results</p> <p>Expression studies with <it>ICS1 promoter::β-glucuronidase </it>(<it>GUS</it>) genes in <it>Arabidopsis thaliana </it>protoplasts cotransfected with <it>35S::WRKY28 </it>showed that over expression of WRKY28 resulted in a strong increase in GUS expression. Moreover, qRT-PCR analyses indicated that the endogenous <it>ICS1 </it>and <it>PBS3 </it>genes were highly expressed in protoplasts overexpressing WRKY28 or WRKY46, respectively. Electrophoretic mobility shift assays indentified potential WRKY28 binding sites in the <it>ICS1 </it>promoter, positioned -445 and -460 base pairs upstream of the transcription start site. Mutation of these sites in protoplast transactivation assays showed that these binding sites are functionally important for activation of the <it>ICS1 </it>promoter. Chromatin immunoprecipitation assays with haemagglutinin-epitope-tagged WRKY28 showed that the region of the <it>ICS1 </it>promoter containing the binding sites at -445 and -460 was highly enriched in the immunoprecipitated DNA.</p> <p>Conclusions</p> <p>The results obtained here confirm results from our multiple microarray co-expression analyses indicating that WRKY28 and WRKY46 are transcriptional activators of <it>ICS1 </it>and <it>PBS3</it>, respectively, and support this <it>in silico </it>screening as a powerful tool for identifying new components of stress signaling pathways.</p

Prospecting for Genes involved in transcriptional regulation of plant defenses, a bioinformatics approach

<p>Abstract</p> <p>Background</p> <p>In order to comprehend the mechanisms of induced plant defense, knowledge of the biosynthesis and signaling pathways mediated by salicylic acid (SA), jasmonic acid (JA) and ethylene (ET) is essential. Potentially, many transcription factors could be involved in the regulation of these pathways, although finding them is a difficult endeavor. Here we report the use of publicly available Arabidopsis microarray datasets to generate gene co-expression networks.</p> <p>Results</p> <p>Using 372 publicly available microarray data sets, a network was constructed in which Arabidopsis genes for known components of SA, JA and ET pathways together with the genes of over 1400 transcription factors were assayed for co-expression. After determining the Pearson Correlation Coefficient cutoff to obtain the most probable biologically relevant co-expressed genes, the resulting network confirmed the presence of many genes previously reported in literature to be relevant for stress responses and connections that fit current models of stress gene regulation, indicating the potential of our approach. In addition, the derived network suggested new candidate genes and associations that are potentially interesting for future research to further unravel their involvement in responses to stress.</p> <p>Conclusions</p> <p>In this study large sets of stress related microarrays were used to reveal co-expression networks of transcription factors and signaling pathway components. These networks will benefit further characterization of the signal transduction pathways involved in plant defense.</p