Genotype-specific responses in Atlantic salmon (Salmo salar) subject to dietary fish oil replacement by vegetable oil: a liver transcriptomic analysis

<p>Abstract</p> <p>Background</p> <p>Expansion of aquaculture is seriously limited by reductions in fish oil (FO) supply for aquafeeds. Terrestrial alternatives such as vegetable oils (VO) have been investigated and recently a strategy combining genetic selection with changes in diet formulations has been proposed to meet growing demands for aquaculture products. This study investigates the influence of genotype on transcriptomic responses to sustainable feeds in Atlantic salmon.</p> <p>Results</p> <p>A microarray analysis was performed to investigate the liver transcriptome of two family groups selected according to their estimated breeding values (EBVs) for flesh lipid content, 'Lean' or 'Fat', fed diets containing either FO or a VO blend. Diet principally affected metabolism genes, mainly of lipid and carbohydrate, followed by immune response genes. Genotype had a much lower impact on metabolism-related genes and affected mostly signalling pathways. Replacement of dietary FO by VO caused an up-regulation of long-chain polyunsaturated fatty acid biosynthesis, but there was a clear genotype effect as fatty acyl elongase (elovl2) was only up-regulated and desaturases (Δ5 fad and Δ6 fad) showed a higher magnitude of response in Lean fish, which was reflected in liver fatty acid composition. Fatty acid synthase (FAS) was also up-regulated by VO and the effect was independent of genotype. Genetic background of the fish clearly affected regulation of lipid metabolism, as PPARα and PPARβ were down-regulated by the VO diet only in Lean fish, while in Fat salmon SREBP-1 expression was up-regulated by VO. In addition, all three genes had a lower expression in the Lean family group than in the Fat, when fed VO. Differences in muscle adiposity between family groups may have been caused by higher levels of hepatic fatty acid and glycerophospholipid synthesis in the Fat fish, as indicated by the expression of FAS, 1-acyl-sn-glycerol-3-phosphate acyltransferase and lipid phosphate phosphohydrolase 2.</p> <p>Conclusions</p> <p>This study has identified metabolic pathways and key regulators that may respond differently to alternative plant-based feeds depending on genotype. Further studies are required but data suggest that it will be possible to identify families better adapted to alternative diet formulations that might be appropriate for future genetic selection programmes.</p

Spatio-temporal patterns of evapotranspiration from groundwater-dependent vegetation

Understanding hydrological processes in water-limited systems requires consideration of temporal and spatial vegetation water use patterns at the landscape scale. We used data derived from the MODerate Resolution Imaging Spectroradiometer (MODIS) satellite instrument and interpolated climate data covering a ten-year period to contrast the spatio-temporal patterns of actual evapotranspiration (AET) from known phreatophytic and non-phreatophytic vegetation overlying a large superficial aquifer. We assessed shallow to deeper groundwater habitats and compared AET responses to seasonal and inter-annual variation in precipitation. Overall, vegetation in shallow groundwater habitats had higher AET rates during the growth season (spring and summer) than vegetation growing in deeper groundwater habitats, suggesting that the former was not physiologically constrained by water deficit. Vegetation in areas of consistently high (ground-)water availability maintained higher AET, reaching a peak of 95 mm in mid-summer. In contrast, plantation maritime pines had the highest AET rates at deep groundwater habitats. Inter-annual variability in AET correlated with rainfall and AET rates peaked two months after the majority of effective rainfall had fallen. During low rainfall years, maximum AET peaked one month earlier relative to higher rainfall years. The results of this study suggest that remote sensing of AET can give a conditional indication of where groundwater is important in supporting vegetation and can be a valuable tool in identifying management focus areas where vegetation is variably sensitive to water deficit. Copyright © 2016 John Wiley & Sons, Ltd. Copyright © 2016 John Wiley & Sons, Ltd