12 research outputs found

    Phenotypes of individual <i>brp</i> gene mutants.

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    <p><b>A</b>. Diagram of mutant construction for 4 <i>brp</i> genes. Open rectangles indicate the non-polar Kan<sup>R</sup> cassette, while the filled rectangle indicates the mini-Tn<i>10</i> insertion in strain TDB3(T) (41). Shading of arrows for the <i>brp</i> cluster indicates putative function encoded: black, flippase involved in EPS transport (for <i>brpJ</i>) or EPS export-related protein (for <i>brpC</i>); light grey, tyrosine autokinase involved in EPS biosynthesis; dark grey, glycosyltransferase involved in EPS biosynthesis; white, unknown function. <b>B</b>. Colony morphology of opaque, rugose, and translucent control variants, the 4 <i>brp</i> mutant strains derived from strain KG3(R), and the complemented mutants. Strains were streaked for isolation on HI agar (containing kanamycin, chloramphenicol and arabinose, as appropriate) and incubated at 30°C ON. <b>C</b>. Streak plate of opaque, rugose, and translucent control variants and the 4 <i>brp</i> mutant strains. Strains were inoculated into HI broth (with kanamycin, where appropriate), shaken ON at 30°C, streaked onto HI (with no antibiotics), and incubated ON at 30°C. <b>D</b>. Colony morphology of the YJ016-derived <i>brpJ</i> mutant YJ-10. The strain was streaked for isolation on HI agar containing kanamycin and incubated at 30°C ON.</p

    Evidence of EPS production for <i>brpJ</i> mutant strain KG3-03.

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    <p>An EPS extraction procedure (see <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0100890#s2" target="_blank">Materials and Methods</a> for details) was performed on KG3(R) and the 4 <i>brp</i> mutant strains, and the results were analyzed by SDS-PAGE using 4% stacking/10% resolving gels and subsequent staining with Stains-All.</p

    Biofilm formation by individual <i>brp</i> gene mutants.

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    <p>Biofilm formation was assessed qualitatively and quantitatively for opaque, rugose, and translucent control variants, the 4 <i>brp</i> mutant strains, and the complemented mutants. <b>A</b>. Following ON growth with shaking, 3 cultures per strain were assessed for pellicle formation and a representative is pictured. Pellicle thickness was scored qualitatively as — (no pellicle), + (thin pellicle), ++ (pellicle), or +++ (thick pellicle). <b>B</b>. Biofilm assays were performed on at least 6 independent culture replicates of each statically grown strain and OD<sub>570</sub> values, which correspond to the amount of crystal violet staining of biofilm material, were averaged. Averages ± standard deviations (SD) are pictured here. Asterisk denotes <i>p</i><0.001 versus KG3(R).</p

    Evidence of three-dimensional structuring of KG3-03 colonies.

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    <p>Whole colonies taken from HI agar plates were vapor fixed with osmium tetroxide and viewed by SEM as described previously <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0100890#pone.0100890-Grau2" target="_blank">[7]</a>. Panels: (A), KG3(R); (B) YJ016; (C), KG4(T); (D) KG3-17; (E, F) KG3-03. All scale bars equal 100 µm. Images in panels E and F are taken from the same colony. All images presented are representative of many images taken for several colonies of each strain. To achieve uniformity, brightness was increased somewhat for images in panels A, B, D and F, while it was decreased for the image in panel C. Contrast was not adjusted for any of the images.</p

    Primers used for non-polar mutagenesis & complementation experiments.

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    1<p>Restriction enzyme sites are underlined. Homologous sequence used in SOE is italicized. <i>Sma</i>I sites are in bold.</p>2<p>From Grau, et al. 2008 <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0100890#pone.0100890-Grau2" target="_blank">[7]</a>.</p

    Primers used for <i>brp</i> distribution analysis.

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    1<p>From Grau, et al. 2008 <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0100890#pone.0100890-Grau2" target="_blank">[7]</a>.</p>2<p>From Garrison-Schilling, et al. 2011 <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0100890#pone.0100890-GarrisonSchilling1" target="_blank">[8]</a>.</p

    Additional file 13: Table S9. of A novel phase variant of the cholera pathogen shows stress-adaptive cryptic transcriptomic signatures

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    Genes that were not significantly differentially regulated from N16961 to N16961R but were significantly down-regulated in N16961SD. (XLSX 25 kb
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