Molecular diversity and association of simple sequence repeat markers with kernel mass in cultivated groundnut (Arachis hypogaea L.)

Abstract Groundnut yield can be further enhanced by improving pod and kernel size vis-a-vis mass. Marker assisted breeding will be an ideal option for directed improvement of hundred kernel mass. A study was undertaken to detect molecular diversity using 35 SSRs in 12 mutant genotypes, developed through chemical mutagenesis, from an interspecific large kernel size pre-breeding line and to identify markers associated with kernel mass. SSRs yielded an average of 3.57 polymorphic bands per primer. Average polymorphism and PIC were 64.95% and 0.62, respectively. Cluster analysis revealed two main clusters separated at 61% Jaccard's similarity coefficient. Vast of the genotypes were grouped into single cluster, confirming common pedigree of these genotypes. AMOVA among 12 mutant genotypes and their parent detected 15% of total variation associated with kernel mass. K-W ANOVA detected significant association of five SSRs with kernel mass. Among these associated primers, TC3A12 and TC9H09 accounted for 28% and 12% of phenotypic variation due to kernel mass and were associated with major QTLs. Out of these two associated primer, TC3A12 differentiated genotypes with higher kernel mass from genotypes with lower kernel mass by amplifying a band of approximately of 450bp. Thus association of TC3A12 primer with a major QTL of kernel mass was further validated in genotypes with diverse background. The TC3A12 primer discriminated genotypes with higher kernel mass from genotype with lower kernel mass by amplifying the band of 400bp among genotypes with higher kernel mass

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Not AvailableGroundnut yield can be further enhanced by improving pod and kernel size vis-a-vis mass. Marker assisted breeding will be an ideal option for directed improvement of hundred kernel mass. A study was undertaken to detect molecular diversity using 35 SSRs in 12 mutant genotypes, developed through chemical mutagenesis, from an interspecific large kernel size pre-breeding line and to identify markers associated with kernel mass. SSRs yielded an average of 3.57 polymorphic bands per primer. Average polymorphism and PIC were 64.95% and 0.62, respectively. Cluster analysis revealed two main clusters separated at 61% Jaccard’s similarity coefficient. Vast of the genotypes were grouped into single cluster, confirming common pedigree of these enotypes. AMOVA among 12 mutant genotypes and their parent detected 15% of total variation associated with kernel mass. K-W ANOVA detected significant association of five SSRs with kernel mass. Among these associated primers, TC3A12 and TC9H09 accounted for 28% and 12% of phenotypic variation due to kernel mass and were associated with major QTLs. Out of these two associated primer, TC3A12 differentiated genotypes with higher kernel mass from genotypes with lower kernel mass by amplifying a band of approximately of 450bp. Thus association of TC3A12 primer with a major QTL of kernel mass was further validated in genotypes with diverse background. The TC3A12 primer discriminated genotypes with higher kernel mass from genotype with lower kernel mass by amplifying the band of 400bp among genotypes with higher kernel mass.Not Availabl

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Not AvailablePeanut bud necrosis disease is one of the major diseases in peanut. Interspecific pre-breeding lines were identified as resistant to bud necrosis disease. Molecular diversity analysis in 115 lines resistant to bud necrosis disease using simple sequence repeat markers revealed wide genetic diversity among lines. Out of 219 bands amplified, 205 were found polymorphic. Polymorphism information content (PIC) value ranged from 0.5 to 0.94, with an average of 0.82. The cluster analysis and PCoA grouped 115 resistant lines and one susceptible cultivar into three major clusters sharing 58% similarity. Susceptible cultivar KRG-1 was distantly related to resistant lines NRCGCS-28 and NRCGCS-86. AMOVA predicted 96% variation within population and 4% among populations. NRCGCS-28 and NRCGCS-86 were found to be moderately resistant and KRG-1 as highly susceptible under artificially challenged inoculation conditions. The incubation period for appearance of disease symptoms were longer in NRCGCS-28 and NRCGCS-86 than KRG-1 under artificially challenged inoculation conditions. Thus, the present study reports additional sources for resistance to peanut bud necrosis disease (PBND).Not Availabl

Deep Underground Neutrino Experiment (DUNE), Far Detector Technical Design Report, Volume II: DUNE Physics

The preponderance of matter over antimatter in the early universe, the dynamics of the supernovae that produced the heavy elements necessary for life, and whether protons eventually decay -- these mysteries at the forefront of particle physics and astrophysics are key to understanding the early evolution of our universe, its current state, and its eventual fate. DUNE is an international world-class experiment dedicated to addressing these questions as it searches for leptonic charge-parity symmetry violation, stands ready to capture supernova neutrino bursts, and seeks to observe nucleon decay as a signature of a grand unified theory underlying the standard model. The DUNE far detector technical design report (TDR) describes the DUNE physics program and the technical designs of the single- and dual-phase DUNE liquid argon TPC far detector modules. Volume II of this TDR, DUNE Physics, describes the array of identified scientific opportunities and key goals. Crucially, we also report our best current understanding of the capability of DUNE to realize these goals, along with the detailed arguments and investigations on which this understanding is based. This TDR volume documents the scientific basis underlying the conception and design of the LBNF/DUNE experimental configurations. As a result, the description of DUNE's experimental capabilities constitutes the bulk of the document. Key linkages between requirements for successful execution of the physics program and primary specifications of the experimental configurations are drawn and summarized. This document also serves a wider purpose as a statement on the scientific potential of DUNE as a central component within a global program of frontier theoretical and experimental particle physics research. Thus, the presentation also aims to serve as a resource for the particle physics community at large