Soil microbial activity and N availability with elevated CO2 in Mojave Desert soils

We examined the effects of elevated CO2 on soil nitrogen (N) dynamics in the Mojave Desert by measuring plant N isotope composition (δ15N), soil microbial biomass N, soil respiration, resin-available N, and C and N dynamics during soil incubations. With elevated CO2, foliage of Larrea tridentata and Krameria erecta had mean δ15N 2.1 and 1.1‰ higher with elevated CO2, respectively, and elevated CO2 increased microbial biomass N in dry soils under a perennial grass (6.8 ± 1.4 versus 3.7 ± 0.3 μg/g). Elevated CO2 significantly increased cumulative resin-available N in the field by 12%, driven by available soil moisture. Rates of soil respiration with elevated CO2 were sporadically higher under Pleuraphis and Larrea. Soils under shrubs had greater potential net N mineralization (102.6 ± 24.2 μg/g) than soils under grasses and in plant interspaces (40.0 ± 9.69 μg/g). Rates of recalcitrant N turnover in soil incubations were related to soil substrate availability. Results indicate that shifts in soil microbial structure and/or activity may occur with elevated CO2 and may result in increases in plant-available N when soil moisture is available

Saving our soils

Guest Editoria

A simple method for estimating the influence of eroding soil profiles on atmospheric CO2

This published article is © American Geophysical Union and can found on the publisher's website at http://dx.doi.org/10.1029/2009GB003560Although soil erosion has often been considered a net source of atmospheric carbon (C), several recent studies suggest that erosion serves as a net C sink. We have developed a spreadsheet‐based model of soil organic C dynamics within an eroding profile (Soil Organic Carbon, Erosion, Replacement, and Oxidation (SOrCERO)) that calculates effects of soil organic carbon (SOC) erosion and altered SOC oxidation and production on the net exchange of C between the eroding profile and atmosphere. SOrCERO suggests that erosion can induce a net C sink or source, depending on management practices, the extent to which SOC oxidation and production characteristics change with erosion, and the fate of eroded SOC. Varying these parameters generated a wide range of C source and sink estimates (maximum net source and sink of 1.1/3.1 Pg C yr−1 respectively, applying results globally), highlighting research needs to constrain model estimates. We invite others to download SOrCERO (http://www.kbs.ku.edu/people/staff_www/billings/index.html) to test conceptual models and eroding soil profiles of interest in a consistent, comparable fashion

Nonlinear tree growth dynamics predict resilience to disturbance

Following a disturbance, why does one tree survive while another dies? Physiological mechanisms may explain varying responses to disturbance between different tree species, but fewer studies have investigated conspecific variation in resilience to forest disturbance. We propose that a dynamic signal found in trees may provide clues to their post-disturbance fate. Specifically, linear versus nonlinear growth dynamics of a tree may be an indicator of its likelihood to survive a disturbance. Here, we investigate stands of red oak (Quercus rubra L.) that experienced disturbances in the form of drought and insect attack. Earlier work indicated that oaks dying during these disturbances had faster growth rates in their first years of life, but there was no obvious difference in canopy status, size, age, or microsite habitat between trees that survived and those that died. To investigate potential differences in growth dynamics between these trees, we quantified radial growth of individual trees and used two forecasting models to classify tree growth dynamics as linear or nonlinear. Trees were classified as healthy, declining, or dying based on crown cover, and dynamic patterns of growth were related to these health classifications. Contrary to expectations, we found healthy Q. rubra were significantly more likely to exhibit nonlinear growth dynamics relative to declining and dying trees. The drivers of this effect remain unclear, but nonlinear growth dynamics in healthy trees may represent an enhanced ability to benefit from resource pulses, in turn promoting greater resilience. Our work suggests that forecasting models offer a means of predicting tree survival during forest disturbances and thus represent an increasingly valuable tool as forest disturbances increase in frequency and severity

Warming-enhanced preferential microbial mineralization of humified boreal forest soil organic matter: Interpretation of soil profiles along a climate transect using laboratory incubations

Accepted for publication in Journal of Geophysical Research. Copyright 2012 American Geophysical Union. Further reproduction or electronic distribution is not permitted.Humified soil organic matter storage in boreal forests is large, and its responses to warming over relatively long timescales is critical for predicting soil feedbacks to climate change. To derive information relevant across decades to centuries from manipulative short-term experiments, we conducted incubations of soils from two forested sites along the Newfoundland-Labrador Boreal Ecosystem Latitude Transect in eastern Canada and assessed linkages between incubation data and these sites' profile characteristics. The sites differ in mean annual temperature by 3.4°C, but vegetation and soil types are similar. Organic soils (Oe + Oa) were incubated for 120 days at 15°C and 20°C, with and without a replaced Oi subhorizon possessing a distinct δ13C signature. Laboratory warming induced significantly greater mineralization and leaching of humified SOM relative to replaced Oi, congruent with greater warming-induced increases in phenol oxidase activity relative to enzymes associated with labile C acquisition (percent increases of 101% versus 50%, respectively). These data suggest that warming can influence microbial communities and their enzymatic dynamics such that relative losses of humified SOM are disproportionately enhanced. This is consistent with stable isotopic, C:N, and radiocarbon profile differences between the two sites, which suggest a greater degree of microbial processing and greater relative losses of older SOC over the preceding decades at the warmer site, given our knowledge of organic inputs in these soils. This study is a first step toward linking the divergent timescales represented by soil profiles and laboratory manipulations, an important goal for biogeochemists assessing climate change impacts on SOM dynamics

Investigating microbial transformations of soil organic matter: synthesizing knowledge from disparate fields to guide new experimentation

Discerning why some soil organic matter (SOM) leaves soil profiles relatively quickly while other compounds, especially at depth, can be retained for decades to millennia is challenging for a multitude of reasons. Simultaneous with soil-specific advances, multiple other disciplines have enhanced their knowledge bases in ways potentially useful for future investigations of SOM decay. In this article, we highlight observations highly relevant for those investigating SOM decay and retention but often emanating from disparate fields and residing in literature seldom cited in SOM research. We focus on recent work in two key areas. First, we turn to experimental approaches using natural and artificial aquatic environments to investigate patterns of microbially mediated OM transformations as environmental conditions change, and highlight how aquatic microbial responses to environmental change can reveal processes likely important to OM decay and retention in soils. Second, we emphasize the importance of establishing intrinsic patterns of decay kinetics for purified substrates commonly found in soils to develop baseline rates. These decay kinetics – which represent the upper limit of the reaction rates – can then be compared to substrate decay kinetics observed in natural samples, which integrate intrinsic decay reaction rates and edaphic factors essential to the site under study but absent in purified systems. That comparison permits the site-specific factors to be parsed from the fundamental decay kinetics, an important advance in our understanding of SOM decay (and thus persistence) in natural systems. We then suggest ways in which empirical observations from aquatic systems and purified substrate–enzyme reaction kinetics can be used to advance recent theoretical efforts in SOM-focused research. Finally, we suggest how the observations in aquatic and purified substrate–enzyme systems could be used to help unravel the puzzles presented by oft-observed patterns of SOM characteristics with depth, as one example of the many perplexing SOM-related problems

Short- and long-term temperature responses of soil denitrifier net N2O efflux rates, inter-profile N2O dynamics, and microbial genetic potentials

Production and reduction of nitrous oxide (N2O) by soil denitrifiers influence atmospheric concentrations of this potent greenhouse gas. Accurate projections of the net N2O flux have three key uncertainties: (1) short- vs. long-term responses to warming, (2) interactions among soil horizons, and (3) temperature responses of different steps in the denitrification pathway. We addressed these uncertainties by sampling soil from a boreal forest climate transect encompassing a 5.2 ∘C difference in the mean annual temperature and incubating the soil horizons in isolation and together at three ecologically relevant temperatures in conditions that promote denitrification. Both short-term exposure to warmer temperatures and long-term exposure to a warmer climate increased N2O emissions from organic and mineral soils; an isotopic tracer suggested that an increase in N2O production was more important than a decline in N2O reduction. Short-term warming promoted the reduction of organic horizon-derived N2O by mineral soil when these horizons were incubated together. The abundance of nirS (a precursor gene for N2O production) was not sensitive to temperature, whereas that of nosZ clade I (a gene for N2O reduction) decreased with short-term warming in both horizons and was higher from a warmer climate. These results suggest a decoupling of gene abundance and process rates in these soils that differs across horizons and timescales. In spite of these variations, our results suggest a consistent, positive response of denitrifier-mediated net N2O efflux rates to temperature across timescales in these boreal forests. Our work also highlights the importance of understanding cross-horizon N2O fluxes for developing a predictive understanding of net N2O efflux from soils

Short- and long-term temperature responses of soil denitrifier net N2O efflux rates, inter2 profile N2O dynamics, and microbial genetic potentials

Production and reduction of nitrous oxide (N2O) by soil denitrifiers influence atmospheric concentrations of this potent greenhouse gas. Accurate projections of the net N2O flux have three key uncertainties: (1) short- vs. long-term responses to warming, (2) interactions among soil horizons, and (3) temperature responses of different steps in the denitrification pathway. We addressed these uncertainties by sampling soil from a boreal forest climate transect encompassing a 5.2 ∘C difference in the mean annual temperature and incubating the soil horizons in isolation and together at three ecologically relevant temperatures in conditions that promote denitrification. Both short-term exposure to warmer temperatures and long-term exposure to a warmer climate increased N2O emissions from organic and mineral soils; an isotopic tracer suggested that an increase in N2O production was more important than a decline in N2O reduction. Short-term warming promoted the reduction of organic horizon-derived N2O by mineral soil when these horizons were incubated together. The abundance of nirS (a precursor gene for N2O production) was not sensitive to temperature, whereas that of nosZ clade I (a gene for N2O reduction) decreased with short-term warming in both horizons and was higher from a warmer climate. These results suggest a decoupling of gene abundance and process rates in these soils that differs across horizons and timescales. In spite of these variations, our results suggest a consistent, positive response of denitrifier-mediated net N2O efflux rates to temperature across timescales in these boreal forests. Our work also highlights the importance of understanding cross-horizon N2O fluxes for developing a predictive understanding of net N2O efflux from soils

Deepening roots can enhance carbonate weathering by amplifying CO2-rich recharge

Carbonate weathering is essential in regulating atmospheric CO2 and carbon cycle at the century timescale. Plant roots accelerate weathering by elevating soil CO2 via respiration. It however remains poorly understood how and how much rooting characteristics (e.g., depth and density distribution) modify flow paths and weathering. We address this knowledge gap using field data from and reactive transport numerical experiments at the Konza Prairie Biological Station (Konza), Kansas (USA), a site where woody encroachment into grasslands is surmised to deepen roots. Results indicate that deepening roots can enhance weathering in two ways. First, deepening roots can control thermodynamic limits of carbonate dissolution by regulating how much CO2 transports vertical downward to the deeper carbonate-rich zone. The base-case data and model from Konza reveal that concentrations of Ca and dissolved inorganic carbon (DIC) are regulated by soil pCO2 driven by the seasonal soil respiration. This relationship can be encapsulated in equations derived in this work describing the dependence of Ca and DIC on temperature and soil CO2. The relationship can explain spring water Ca and DIC concentrations from multiple carbonate-dominated catchments. Second, numerical experiments show that roots control weathering rates by regulating recharge (or vertical water fluxes) into the deeper carbonate zone and export reaction products at dissolution equilibrium. The numerical experiments explored the potential effects of partitioning 40 % of infiltrated water to depth in woodlands compared to 5 % in grasslands. Soil CO2 data suggest relatively similar soil CO2 distribution over depth, which in woodlands and grasslands leads only to 1 % to ∼ 12 % difference in weathering rates if flow partitioning was kept the same between the two land covers. In contrast, deepening roots can enhance weathering by ∼ 17 % to 200 % as infiltration rates increased from 3.7 × 10−2 to 3.7 m/a. Weathering rates in these cases however are more than an order of magnitude higher than a case without roots at all, underscoring the essential role of roots in general. Numerical experiments also indicate that weathering fronts in woodlands propagated > 2 times deeper compared to grasslands after 300 years at an infiltration rate of 0.37 m/a. These differences in weathering fronts are ultimately caused by the differences in the contact times of CO2-charged water with carbonate in the deep subsurface. Within the limitation of modeling exercises, these data and numerical experiments prompt the hypothesis that (1) deepening roots in woodlands can enhance carbonate weathering by promoting recharge and CO2–carbonate contact in the deep subsurface and (2) the hydrological impacts of rooting characteristics can be more influential than those of soil CO2 distribution in modulating weathering rates. We call for colocated characterizations of roots, subsurface structure, and soil CO2 levels, as well as their linkage to water and water chemistry. These measurements will be essential to illuminate feedback mechanisms of land cover changes, chemical weathering, global carbon cycle, and climate