127 research outputs found
Vibrational Enhancement of the Effective Donor - Acceptor Coupling
The paper deals with a simple three sites model for charge transfer phenomena
in an one-dimensional donor (D) - bridge (B) - acceptor (A) system coupled with
vibrational dynamics of the B site. It is found that in a certain range of
parameters the vibrational coupling leads to an enhancement of the effective
donor - acceptor electronic coupling as a result of the formation of the
polaron on the B site. This enhancement of the charge transfer efficiency is
maximum at the resonance, where the effective energy of the fluctuating B site
coincides with the donor (acceptor) energy.Comment: 5 pages, 3 figure
Influence of the Environment Fluctuations on Incoherent Neutron Scattering Functions
In extending the conventional dynamic models, we consider a simple model to
account for the environment fluctuations of particle atoms in a protein system
and derive the elastic incoherent structure factor (EISF) and the incoherent
scattering correlation function C(Q,t) for both the jump dynamics between sites
with fluctuating site interspacing and for the diffusion inside a fluctuating
sphere. We find that the EISF of the system (or the normalized elastic
intensity) is equal to that in the absence of fluctuations averaged over the
distribution of site interspacing or sphere radius a. The scattering
correlation function is ,
where the average is taken over the Q-dependent effective distribution of
relaxation rates \lambda_n(a) and \psi(t) is the correlation function of the
length a. When \psi(t)=1, the relaxation of C(Q,t) is exponential for the jump
dynamics between sites (since \lambda_n(a) is independent of a) while it is
nonexponential for diffusion inside a sphere.Comment: 7 pages, 7 eps figure
Simulation of a semiflexible polymer in a narrow cylindrical pore
The probability that a randomly accelerated particle in two dimensions has
not yet left a simply connected domain after a time decays as
for long times. The same quantity also determines the
confinement free energy per unit length of a
semiflexible polymer in a narrow cylindrical pore with cross section . From simulations of a randomly accelerated particle we estimate the
universal amplitude of for both circular and rectangular cross
sections.Comment: 10 pages, 2 eps figure
Title Stabilization of Membrane Pores by Packing
We present a model for pore stabilization in membranes without surface
tension. Whereas an isolated pore is always unstable (since it either shrinks
tending to re-seal or grows without bound til to membrane disintegration), it
is shown that excluded volume interactions in a system of many pores can
stabilize individual pores of a given size in a certain range of model
parameters. For such a multipore membrane system, the distribution of pore size
and associated pore lifetime are calculated within the mean field
approximation. We predict that, above certain temperature when the effective
line tension becomes negative, the membrane exhibits a dynamic sieve-like
porous structure.Comment: 4 pages, 4 figure
Spatial Constraint Corrections to the Elasticity of dsDNA Measured with Magnetic Tweezers
In this paper, we have studied, within a discrete WLC model, the spatial
constraints in magnetic tweezers used in single molecule experiments. Two
elements are involved: first, the fixed plastic slab on which is stuck the
initial strand, second, the magnetic bead which pulls (or twists) the attached
molecule free end. We have shown that the bead surface can be replaced by its
tangent plane at the anchoring point, when it is close to the bead south pole
relative to the force. We are led to a model with two parallel repulsive
plates: the fixed anchoring plate and a fluctuating plate, simulating the bead,
in thermal equilibrium with the system. The bead effect is a slight upper shift
of the elongation, about four times smaller than the similar effect induced by
the fixed plate. This rather unexpected result, has been qualitatively
confirmed within the soluble Gaussian model. A study of the molecule elongation
versus the countour length exhibits a significant non-extensive behaviour. The
curve for short molecules (with less than 2 kbp) is well fitted by a straight
line, with a slope given by the WLC model, but it does not go through the
origin. The non-extensive offset gives a 15% upward shift to the elongation of
a 2 kbp molecule stretched by a 0.3 pN force.Comment: 28 pages, 6 figures An explanatory figure has been added. The
physical interpretation of the results has been made somewhat more
transparen
Diffusing-wave spectroscopy of nonergodic media
We introduce an elegant method which allows the application of diffusing-wave
spectroscopy (DWS) to nonergodic, solid-like samples. The method is based on
the idea that light transmitted through a sandwich of two turbid cells can be
considered ergodic even though only the second cell is ergodic. If absorption
and/or leakage of light take place at the interface between the cells, we
establish a so-called "multiplication rule", which relates the intensity
autocorrelation function of light transmitted through the double-cell sandwich
to the autocorrelation functions of individual cells by a simple
multiplication. To test the proposed method, we perform a series of DWS
experiments using colloidal gels as model nonergodic media. Our experimental
data are consistent with the theoretical predictions, allowing quantitative
characterization of nonergodic media and demonstrating the validity of the
proposed technique.Comment: RevTeX, 12 pages, 6 figures. Accepted for publication in Phys. Rev.
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