1,053 research outputs found

    Slip of grip of a molecular motor on a crowded track: Modeling shift of reading frame of ribosome on RNA template

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    We develop a stochastic model for the programmed frameshift of ribosomes synthesizing a protein while moving along a mRNA template. Normally the reading frame of a ribosome decodes successive triplets of nucleotides on the mRNA in a step-by-step manner. We focus on the programmed shift of the ribosomal reading frame, forward or backward, by only one nucleotide which results in a fusion protein; it occurs when a ribosome temporarily loses its grip to its mRNA track. Special "slippery" sequences of nucleotides and also downstream secondary structures of the mRNA strand are believed to play key roles in programmed frameshift. Here we explore the role of an hitherto neglected parameter in regulating -1 programmed frameshift. Specifically, we demonstrate that the frameshift frequency can be strongly regulated also by the density of the ribosomes, all of which are engaged in simultaneous translation of the same mRNA, at and around the slippery sequence. Monte Carlo simulations support the analytical predictions obtained from a mean-field analysis of the stochastic dynamics.Comment: This is an author-created, un-copyedited final version of an article published in EP

    Study of young stellar objects and associated filamentary structures in the inner Galaxy

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    Young Stellar Objects (YSOs) in the inner Galactic region 100<l<15010^0 < l < 15^0 and āˆ’10<b<10-1^0 < b < 1^0 are studied using GLIMPSE images and GLIMPSE data catalogue. A total number of 1107 Class I and 1566 Class II sources are identified in this Galactic region. With the help of GLIMPSE 5.8 Ī¼\mum & 8 Ī¼\mum images, we have identified the presence of 10 major star forming sites in the Galactic midplane, of which 8 of them are filamentary while 2 are possible clusters of Class I & II sources. The length of the identified filaments are estimated as 8'-33' (āˆ¼\sim 9 - 56 pc). Occurrence of Hub-Filamentary System (HFS) is observed in many filamentary star forming sites. Most of the Class I sources are found to be aligned along the length of these filamentary structures, while Class II sources have a random distribution. Mass and age distribution of 425 Class I and 241 Class II sources associated with filaments & clusters are studied through their SED analysis. Most of the Class I sources detected have mass >> 8MāŠ™_\odot, while Class II sources have relatively low mass regime. Class I sources have ages ā‰¤\le 0.5 Myr, while Class II sources have ages in the range āˆ¼\sim0.1 - 3 Myr. Along with the help of high mass star forming tracers, we demonstrate that the 10 regions studied here are forming a large number of high-mass stars.Comment: 19 pages, 18 figures. Accepted for publication in MNRA
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