CADB: Conformation Angles DataBase of proteins

Conformation Angles DataBase (CADB) provides an online resource to access data on conformation angles (both main-chain and side-chain) of protein structures in two data sets corresponding to 25% and 90% sequence identity between any two proteins, available in the Protein Data Bank. In addition, the database contains the necessary crystallographic parameters. The package has several flexible options and display facilities to visualize the main-chain and side-chain conformation angles for a particular amino acid residue. The package can also be used to study the interrelationship between the main-chain and side-chain conformation angles. A web based JAVA graphics interface has been deployed to display the user interested information on the client machine. The database is being updated at regular intervals and can be accessed over the World Wide Web interface at the following URL: http://144.16.71.148/cadb/

Side-chain conformation angles of amino acids: effect of temperature factor cut-off

The paper presents the analysis of the side-chain conformation angles of amino acids in 90% non-identical protein structures. The analysis has been carried out using 113,699 residues, which is higher compared to the previous studies. In the present study, one more quality check, namely, temperature factor cut-off, has been introduced in addition to resolution and R-factor cut-offs. Due to this, the present calculation reveals the approximate values for the minimum and the maximum of the three-rotameric states of $\chi_1$. In addition, the conformation angles $\chi_2$ and $\chi_3$ have been addressed with the improved data set. The results reported here could be of use in protein modeling

Variation of lexan polycarbonate properties by electron beam

The modifications in microstructural, optical, and photoluminescence properties of the Lexan polycarbonate (bisphenol-A-polycarbonate) films exposed to different electron doses have been studied using UV-vis spectroscopy, Fourier transform infrared spectroscopy (FTIR), positron annihilation lifetime spectroscopy, photoluminescence spectroscopy, and scanning electron microscopy (SEM). The obtained UV-vis spectroscopy results showed decrease in optical energy gap, optical activation energy, and increase in number of carbon atoms per cluster with increase in electron dose. The chemical changes in electron irradiated polymers due to chain scission and reconstruction have been observed from FTIR spectroscopy. The correlation of positron lifetime study with optical measurement is obtained, and electron irradiation-induced microstructural modifications within the polymer is understood. SEM result shows the degradation of Lexan polymer after electron irradiation. The mechanical properties and average molecular weight of Lexan decrease after irradiation, whereas average number of chain scissions per original polymer molecule increases