Interannual variation in early marine survival patterns of Puget Sound steelhead smolts indicates shifting predation pressures

Marine survival of steelhead smolts during their two week migration from river mouths to the Strait of Juan de Fuca has been estimated at 20% or less for several populations originating in Puget Sound. Low survival rates likely reduce overall smolt-to-adult return rates and limit recovery of Puget Sound steelhead populations. Harbor seals are generalist predators known to eat juvenile salmon in the Salish Sea. Harbor seals were captured in 2014 (12 seals) and 2016 (16 seals) and outfitted with acoustic telemetry receivers and GPS tags to quantify likely predation events and estimate foraging area overlap with acoustically tagged steelhead smolts. In 2014, mark-recapture estimates indicated that survival of steelhead through Central Puget Sound (Tacoma Narrows to Admiralty Inlet) was low (19%) and stationary tags were detected at harbor seal haulouts. In 2016 survival of steelhead through Central Puget Sound was high (69%), and no steelhead tags were detected stationary at harbor seal haulouts in the same region. However, in 2016, evidence of predation by harbor seals increased in the Nisqually estuary. Further, in both years, detection patterns of some tags were consistent with harbor seal movements, suggesting that tagged smolts had been eaten and were being carried by harbor seals. Steelhead smolt migratory behavior patterns through the Puget Sound epi-pelagic environment were very similar in the two years and do not likely explain the differences in survival or predation risk. We are currently exploring whether the increased presence of transient killer whales in Puget Sound and increases in anchovy abundance (an alternative prey source) may play a role in altering predation pressures and marine survival of steelhead smolts

Early marine survival of steelhead smolts in Puget Sound

Smolt-to adult survival rates for Puget Sound steelhead populations have declined substantially over the last 25 years and remain at or near historic lows. From 2006-2009, nearly 1,400 steelhead smolts from 9 watersheds within Puget Sound were tracked from river mouth to the Pacific Ocean using acoustic telemetry to: (1) estimate early marine survival through Puget Sound, (2) identify common areas of abnormally high mortality along the migration route, and (3) to identify factors that may influence survival. Cormac-Jolly-Seber mark-recapture models were used to jointly estimate survival and detection rate at telemetry arrays. Estimated survival rates from river mouths to near the Pacific Ocean ranged from 1.5% (Skokomish River hatchery smolts in 2009) to 34.0% (Big Beef Creek wild smolts in 2006), and averaged 14.9% for all populations. Factors influencing survival included population, migration segment, migration year, and rearing type (i.e., hatchery or wild), while geographic region, body length, and tag type (i.e., 7mm or 9mm) showed lesser effects. Comparison of survival rates between migration segments implicated central Puget Sound and Admiralty Inlet as potential areas of heightened mortality. Early marine survival rates estimated here are very low considering that steelhead smolts spend only about two to three weeks in Puget Sound before entering the Pacific Ocean. Mortality in Puget Sound may be a major driver behind low observed smolt-to adult survival rates. This study addresses a major gap in steelhead marine life history knowledge and can help to inform future Puget Sound steelhead recovery planning efforts

Movements of hatchery-reared lingcod released on rocky reefs in Puget Sound

Abstract Fourteen sub-adult hatchery-reared lingcod (Ophiodon elongatus) were released onto reefs in South Puget Sound, Washington, USA to evaluate their movement behavior. Acoustic telemetry revealed variation in movement among individuals that was related to body size. Larger lingcod tended to leave the release reef sooner than smaller lingcod. Four lingcod left the reefs less than 10 days after release, while three lingcod left between one and 4 months after release. Seven lingcod remained at the release reefs for the entire 5-month study, though they did make apparent short-term (< 24 h duration) excursions away from the reefs. Data suggest that the frequency and duration of excursions increase with age and size in both wild and hatchery lingcod. Movement data from these hatchery lingcod and previously published studies on wild lingcod are compared

Early Marine Migration Patterns of Wild Coastal Cutthroat Trout (Oncorhynchus clarki clarki), Steelhead Trout (Oncorhynchus mykiss), and Their Hybrids

Hybridization between coastal cutthroat trout (Oncorhynchus clarki clarki) and steelhead or rainbow trout (Oncorhynchus mykiss) has been documented in several streams along the North American west coast. The two species occupy similar freshwater habitats but the anadromous forms differ greatly in the duration of marine residence and migration patterns at sea. Intermediate morphological, physiological, and performance traits have been reported for hybrids but little information has been published comparing the behavior of hybrids to the pure species.This study used acoustic telemetry to record the movements of 52 cutthroat, 42 steelhead x cutthroat hybrids, and 89 steelhead smolts, all wild, that migrated from Big Beef Creek into Hood Canal (Puget Sound, Washington). Various spatial and temporal metrics were used to compare the behavior of the pure species to their hybrids. Median hybrid residence time, estuary time, and tortuosity values were intermediate compared to the pure species. The median total track distance was greater for hybrids than for either cutthroat or steelhead. At the end of each track, most steelhead (80%) were located near or north of the Hood Canal, as expected for this seaward migrating species, whereas most cutthroat (89%) were within 8 kilometers of the estuary. Most hybrids (70%) were detected leaving Hood Canal, though a substantial percentage (20%) remained near the Big Beef Creek estuary. More hybrids (7.5%) than pure cutthroat (4.5%) or steelhead (0.0%) were last detected in the southern reaches of Hood Canal.Given the similarity in freshwater ecology between the species, differences in marine ecology may play an important role in maintaining species integrity in areas of sympatry

"The Success of Captive Broodstock Programs Depends on High In-Culture Survival, ..." [from the Abstract], 2006-2007 Progress Report.

The success of captive broodstock programs depends on high in-culture survival, appropriate development of the reproductive system, and the behavior and survival of cultured salmon after release, either as adults or juveniles. Continuing captive broodstock research designed to improve technology is being conducted to cover all major life history stages of Pacific salmon. Accomplishments detailed in this report are listed below by major objective. Objective 1: This study documented that captively reared Chinook exhibited spawn timing similar to their founder anadromous population. An analysis of spawn timing data of captively reared Chinook salmon that had received different levels of antibiotic treatment did not suggest that antibiotic treatments during the freshwater or seawater phase of the life cycle affects final maturation timing. No effect of rearing density was found with respect to spawn timing or other reproductive behaviors. Objective 2: This study investigated the critical period(s) for imprinting for sockeye salmon by exposing juvenile salmon to known odorants at key developmental stages. Molecular assessments of imprinting-induced changes in odorant receptor gene expression indicated that regulation of odorant expression differs between coho and sockeye salmon. While temporal patterns differ between these species, exposure to arginine elicited increases in odorant receptor mRNA expression in sockeye salmon. Objective 3: This study: (i) identified the critical period when maturation is initiated in male spring Chinook salmon and when body growth affects onset of puberty, (ii) described changes in the reproductive endocrine system during onset of puberty and throughout spermatogenesis in male spring Chinook salmon, (iii) found that the rate of oocyte development prior to vitellogenesis is related to body growth in female spring Chinook, and (iv) demonstrated that growth regimes which reduce early (age 2) male maturation slow the rate of primary and early secondary oocyte growth, but do not alter number of oocytes at these stages of development. Objective 4 : This study, (1) determined that infected fish treated with oxytetracycline-medicated feed (as fry or as presmolts) had improved survival compared to nonmedicated fish, (2) determined that a single 14-day course of oral azithromycin at first feeding or at the start of smoltification is sufficient for significant azithromycin retention in internal tissues for at least a year, and (3) established that Renibacterium salmoninarum with an azithromycin-resistant phenotype can be isolated from Chinook salmon receiving macrolide antibiotic treatment. Objective 5: This study determined that for Chinook salmon rearing in similar, 'common environment' regimes in seawater, control fish have survived at a higher rate since seawater transfer than have experimentally inbred fish. However, in all groups, the variation among families in survival has been substantial, ranging from 0% to 100% over the entire year and from 0% to 40% since seawater transfer. The highly significant effect of variation among families within both stocks indicates that substantial genetic variation for size remains in these populations

"Research to Improve the Efficacy of Captive Broodstock Programs and Advance Hatchery Reform Throughout the Columbia River Basin." [from the Abstract], 2008-2009 Progress Report.

This project was developed to conduct research to improve the efficacy of captive broodstock programs and advance hatchery reform throughout the Columbia River Basin. The project has three objectives: (1) maintain adaptive life history characteristics in Chinook salmon, (2) improve imprinting in juvenile sockeye salmon, and (3) match wild phenotypes in Chinook and sockeye salmon reared in hatcheries. A summary of the results are as follows: Objective 1: The ratio of jack to adult male Chinook salmon were varied in experimental breeding populations to test the hypothesis that reproductive success of the two male phenotypes would vary with their relative frequency in the population. Adult Chinook salmon males nearly always obtained primary access to nesting females and were first to enter the nest at the time of spawning. Jack male spawning occurred primarily by establishing satellite positions downstream of the courting pair, and 'sneaking' into the nest at the time of spawning. Male dominance hierarchies were fairly stable and strongly correlated with the order of nest entry at the time of spawning. Observed participation in spawning events and adult-to-fry reproductive success of jack and adult males was consistent with a negative frequency-dependent selection model. Overall, jack males sired an average of 21% of the offspring produced across a range of jack male frequencies. Implications of these and additional findings on Chinook salmon hatchery broodstock management will be presented in the FY 2009 Annual Report. Objective 2: To determine the critical period(s) for imprinting for sockeye salmon, juvenile salmon were exposed to known odorants at key developmental stages. Molecular assessments of imprinting-induced changes in odorant receptor gene expression indicated that regulation of odorant expression is influenced by developmental status and odor exposure history. Expression levels of basic amino acid receptor (BAAR) mRNA in the olfactory epithelium increased dramatically during final maturation in both Stanley Basin and Okanogan River sockeye. These increases appeared to be independent of odor exposure history, rising significantly in both arginine-naive and arginine-exposed fish. However, sockeye exposed to arginine during smolting demonstrated a larger increase in BAAR mRNA than arginine-naive fish. These results are consistent with the hypothesis that odorant receptors sensitive to home stream waters may be upregulated at the time of the homing migration and may afford opportunities to exploit this system to experimentally characterize imprinting success and ultimately identify hatchery practices that will minimize straying of artificially produced salmonids. Additional analysis of Sockeye salmon imprinting and further implications of these findings will be presented in the FY 2009 Annual Report. Objective 3: Photoperiod at emergence and ration after ponding were varied in Yakima River spring Chinook salmon to test the hypothesis that seasonal timing of emergence and growth during early stages of development alter seasonal timing of smoltification and age of male maturation. Fish reared under conditions to advance fry emergence and accelerate growth had the greatest variation in seasonal timing of smolting (fall, spring and summer) and highest rates of early male maturation with most males maturing at age 1 (35-40%). In contrast, fish with delayed emergence and slow growth had the least variation in phenotypes with most fish smolting as yearlings in the spring and no age-1 male maturation. Growth (not emergence timing) altered rates of age-2 male maturation. Results of this study demonstrate that altering fry development, as is often done in hatcheries, can profoundly affect later life history transitions and the range of phenotypes within a spring Chinook salmon population. Additional work in the next funding period will determine if these rearing regimes affected other aspects of smolt quality, which may affect ultimate survival upon ocean entry

"Research to Improve the Efficacy of Captive Broodstock Programs and Advance Hatchery Reform Throughout the Columbia River Basin." [from the Abstract], 2007-2008 Annual Progress Report.

This project was developed to conduct research to improve the efficacy of captive broodstock programs and advance hatchery reform throughout the Columbia river basin. The project has three objectives: (1) maintain adaptive life history characteristics in Chinook salmon, (2) improve imprinting in juvenile sockeye salmon, and (3) match wild phenotypes in Chinook and sockeye salmon reared in hatcheries. A summary of the results are as follows: Objective 1: Adult and jack Chinook salmon males were stocked into four replicate spawning channels at a constant density (N = 16 per breeding group), but different ratios, and were left to spawn naturally with a fixed number of females (N = 6 per breeding group). Adult males obtained primary access to females and were first to enter the nest at the time of spawning. Jack male spawning occurred primarily by establishing satellite positions downstream of the courting pair, and 'sneaking' into the nest at the time of spawning. Male dominance hierarchies were fairly stable and strongly correlated with the order of nest entry at the time of spawning. Spawning participation by jack and adult males is consistent with a negative frequency dependent selection model, which means that selection during spawning favors the rarer life history form. Results of DNA parentage assignments will be analyzed to estimate adult-to-fry fitness of each male. Objective 2: To determine the critical period(s) for imprinting for sockeye salmon, juvenile salmon were exposed to known odorants at key developmental stages. Molecular assessments of imprinting-induced changes in odorant receptor gene expression indicated that regulation of odorant expression is influenced by developmental status and odor exposure history. The results suggest that sockeye salmon are capable of imprinting to homing cues during the developmental periods that correspond to several of current release strategies employed as part of the Captive Broodstock program (specifically, planting eyed eggs, fall and smolt releases into the lake) appear to be appropriate for successful homing of sockeye in Redfish Lake. Also, our findings indicated that sockeye salmon were capable of olfactory imprinting at multiple life stages and over varying exposure durations. Fish exposed to odors just prior to smolting showed the strongest attraction to the imprinting odor arginine and this period corresponds to the period of highest plasma thyroxine levels and increased BAAR receptor mRNA in juveniles. Objective 3: Spring Chinook salmon were exposed to three different photoperiods and three feed rations at the button-up stage of development. Both photoperiod at emergence and ration post-ponding affected the number of males maturing at age one. Nearly 70% of the males in the early emergence and satiation fed group matured after the first year of rearing, while none of the fish reared on late emergence photoperiod (equivalent to emergence on May 1) matured during this time irrespective of ration treatment. Within the early emergence groups, reducing growth using ration (low or high) appeared to reduce the number of males maturing at age one from 70% to 40-50%. Maturation rates of fish that emerged in a photoperiod equivalent to mid-February (middle emergence) ranged from 10-25%. Together these data indicate that the seasonal timing of fry emergence and growth after ponding can alter life history patterns in spring Chinook salmon. The results imply that hatchery rearing practices that alter seasonal timing of fry emergence can have drastic effects on life history patterns in juvenile Chinook salmon. All three objectives are on-going and will result in recommendations (at the end of the FY 2009 performance period) to advance hatchery reforms in conventional and captive broodstock programs

The 1994 Joint US-Russian Kamchatka Steelhead Expedition

NMF