Setting a baseline for global urban virome surveillance in sewage

The rapid development of megacities, and their growing connectedness across the world is becoming a distinct driver for emerging disease outbreaks. Early detection of unusual disease emergence and spread should therefore include such cities as part of risk-based surveillance. A catch-all metagenomic sequencing approach of urban sewage could potentially provide an unbiased insight into the dynamics of viral pathogens circulating in a community irrespective of access to care, a potential which already has been proven for the surveillance of poliovirus. Here, we present a detailed characterization of sewage viromes from a snapshot of 81 high density urban areas across the globe, including in-depth assessment of potential biases, as a proof of concept for catch-all viral pathogen surveillance. We show the ability to detect a wide range of viruses and geographical and seasonal differences for specific viral groups. Our findings offer a cross-sectional baseline for further research in viral surveillance from urban sewage samples and place previous studies in a global perspective

The Grain-size Patchiness of Braided Gravel-Bed Streams – example of the Urumqi River (northeast Tian Shan, China)

International audienceIn gravel-bed rivers, sediments are often sorted into patches of different grain-sizes, but in braided streams, the link between this sorting and the channel morpho-sedimentary elements is still unclear. In this study, the size of the bed sediment in the shallow braided gravel-bed Urumqi River is characterized by surface-count and volumet-ric sampling methods. Three morpho-sedimentary elements are identified in the active threads of the river: chutes at flow constrictions, which pass downstream to anabranches and bars at flow expansions. The surface and surface-layer grain-size distributions of these three elements show that they correspond to only two kinds of grain-size patches: (1) coarse-grained chutes, coarser than the bulk river bed, and (2) finer-grained anabranches and bars, consistent with the bulk river bed. In cross-section, the chute patches are composed of one coarse-grained top layer, which can be interpreted as a local armour layer overlying finer deposits. In contrast, the grain size of the bar-anabranch patches is finer and much more homogeneous in depth than the chute patches. Those patches, which are features of lateral and vertical sorting associated to the transport dynamics that build braided patterns, may be typical of active threads in shallow gravel-bed rivers and should be considered in future works on sorting processes and their geomorphologic and stratigraphic results

Erosion rates deduced from seasonal mass balance along the upper Urumqi River in Tianshan

International audienceWe report measurements performed during two complete flow seasons on the Urumqi River, a proglacial mountain stream in the northeastern flank of the Tianshan, an active mountain range in Central Asia. This survey of flow dynamics and sediment transport (dissolved, suspended and bed loads), together with a 25-year record of daily discharge , enables the assessment of secular denudation rates on this high mountain catchment of Central Asia. Our results show that chemical weathering accounts for more than one-third of the total denudation rate. Sediment transported as bed load cannot be neglected in the balance, given that sand and gravel transport accounts for one third of the solid load of the river. Overall, the mean denudation rates are low, averaging 46 t × km −2 × yr −1 (17–18 m Myr −1). We furthermore analyse the hydrologic record to show that the long-term sediment budget is not dominated by extreme and rare events but by the total amount of rainfall or annual runoff. The rates we obtain are in agreement with rates obtained from the mass balance reconstruction of the Plio-Quaternary gravely deposits of the foreland but signicantly lower than the rates recently obtained from cosmogenic dating of the Kuitun River sands, west of the Urumqi River. We show that the resolution of this incompatibility may have an important consquence for our understanding of the interplay between erosion and tectonics in the semi-humid ranges of Central Asia