Gene expression related to oxidative stress induced by herbicides in rice.

Herbicides are stressors that can have negative effects on plants. In Oryza sativa (L.), differential gene expression may be evalu-ated through real-time reverse transcription quantitative poly-merase chain reaction (RT-qPCR). The aim of this study was to evaluate the stability of candidate reference genes and to quan-tify the relative expression of oxidative stress genes at different times (12, 24, 48, and 96 hours after treatment [HAT]) with penoxsulam, cyhalofop-butyl, and bentazon herbicides. Norm-Finder, BestKeeper, and GeNorm software and the compara-tive ∆Ct method were used to assess expression stability and to determine the RT-qPCR threshold values of the candidate reference genes. The UBQ5 gene was the most stable among the reference genes analyzed. The gene expression results showed upregulation of OsCAT and OsMnSOD1 genes at all times after herbicide application. The OsA PX 2 and OsGST3 genes showed increased gene expression at 12 and 96 HAT for all herbicides. The OsHO -1 gene had the most significant expression changes, with maximum expression levels at 24 HAT with bentazon and at 96 HAT with penoxsulam and cyhalofop-butyl. Overall, antioxidant system gene expression increased after the applica-tion of bentazon, penoxsulam, and cyhalofop-butyl in ric

Expression of antioxidant genes and photosynthetic apparatus in the soybean crop in competition with Italian ryegrass biotypes.

Crop-weed competition induces stress in plants causing physiological changes which can be evaluated using the RT-qPCR technique. The aim of this study was to evaluate the stability of candidate reference genes and measure the relative gene expression of antioxidant enzymes and components of the photosynthetic apparatus in soybean in competition with glyphosate-susceptible and resistant Italian ryegrass (Lolium multiflorum Lam.). The experiment was carried out in a greenhouse using replacement series between soybean and Italian ryegrass biotypes. In this study, candidate reference genes were evaluated for use as controls in RT-qPCR to quantify gene expression. An evaluation was made of genes that encode catalase, ascorbate peroxidase, superoxide dismutase, chlorophyll a/b, phytochrome A and cytochrome P450 at 50 days after emergence of the soybean. The SKIP and GAPDH genes were the most stable for soybean and Italian ryegrass, respectively. The soybean subjected to the interspecific competition with the glyphosate-resistant Italian ryegrass biotype showed an increase in superoxide dismutase gene expression. The catalase and cytochrome P450 genes were up-regulated in the susceptible biotype while the other genes were down-regulated. However, the soybean crop under interspecific competition with glyphosate-resistant biotye showed as up-regulated for all the genes evaluated. For the photosynthetic apparatus, cytochrome P450 gene was up-regulated under intraspecific competition on both Italian ryegrass biotypes, while the phytochrome A was up-regulated only in the resistant biotype. Thus, the increase in genes investigated represents a potential tool for the genetic improvement of plants to enhance their competitive capacity

Rice mutants and their responses to suboptimal temperatures in the early stages of development.

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Transcriptome analysis identifies candidate target genes involved in glyphosate-resistance mechanism in lolium multiflorum.

Italian ryegrass (Lolium multiflorum; LOLMU) is one of the most troublesome weeds in temperate regions in the world. This weed species interfere with wheat, corn, rye, and oat, causing significant crop yield losses. This species has evolved glyphosate resistance, making it difcult to control. The mechanisms of glyphosate resistance are still unknown, and an understanding thereof will favor the development of new strategies of management. The present study is the first transcriptome study in LOLMU using glyphosate-resistant and -sensitive biotypes, aiming to identify and to provide a list of the candidate target genes related to glyphosate resistance mechanism. The transcriptome was assembled de novo, producing 87,433 contigs with an N50 of 740 bp and an average length of 575 bp. There were 92 and 54 up- and down-regulated genes, respectively, in the resistant biotype, while a total of 1683 were diferentially expressed in the sensitive biotype in response to glyphosate treatment. We selected 14 highly induced genes and seven with repressed expression in the resistant biotype in response to glyphosate. Of these genes, a significant proportion were related to the plasma membrane, indicating that there is a barrier making it difcult for glyphosate to enter the cell