Adenovirus-based vectors: maximizing opportunities and optimizing a rich diversity of vectors for gene-based therapy

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The Rotating Mass Matrix, the Strong CP Problem and Higgs Decay

We investigate a recent solution to the strong CP problem, obtaining a theta-angle of order unity, and show that a smooth trajectory of the massive eigenvector of a rank-one rotating mass matrix is consistent with the experimental data for both fermion masses and mixing angles (except for the masses of the lightest quarks). Using this trajectory we study Higgs decay and find suppression of $\Gamma(H\to c\bar{c})$ compared to the standard model predictions for a range of Higgs masses. We also give limits for flavour violating decays, including a relatively large branching ratio for the $\tau^-\mu^+$ mode.Comment: 15 pages, 6 figures; improvements to introduction and preliminarie

Random Exchange Quantum Heisenberg Chains

The one-dimensional quantum Heisenberg model with random $\pm J$ bonds is studied for $S=\frac{1}{2}$ and $S=1$. The specific heat and the zero-field susceptibility are calculated by using high-temperature series expansions and quantum transfer matrix method. The susceptibility shows a Curie-like temperature dependence at low temperatures as well as at high temperatures. The numerical results for the specific heat suggest that there are anomalously many low-lying excitations. The qualitative nature of these excitations is discussed based on the exact diagonalization of finite size systems.Comment: 13 pages, RevTex, 12 figures available on request ([email protected]

Centrality Dependence of Charged Particle Multiplicity at Mid-Rapidity in Au+Au Collisions at sqrt(s_NN) = 130 GeV

We present a measurement of the pseudorapidity density of primary charged particles near mid-rapidity in Au+Au collisions at sqrt(s_NN) = 130 GeV as a function of the number of participating nucleons. These results are compared to models in an attempt to discriminate between competing scenarios of particle production in heavy ion collisions.Comment: 5 pages, 4 figures, revtex (submitted to Phys. Rev. Letters

Neutrino Detection With CLEAN

This article describes CLEAN, an approach to the detection of low-energy solar neutrinos and neutrinos released from supernovae. The CLEAN concept is based on the detection of elastic scattering events (neutrino-electron scattering and neutrino-nuclear scattering) in liquified noble gases such as liquid helium, liquid neon, and liquid xenon, all of which scintillate brightly in the ultraviolet. Key to the CLEAN technique is the use of a thin film of wavelength-shifting fluor to convert the ultraviolet scintillation light to the visible. This allows the same liquid to be used as both a passive shielding medium and an active self-shielding detector, allowing lower intrinsic radioactive backgrounds at low energies. Liquid neon is a particularly promising medium for CLEAN. Because liquid neon has a high scintillation yield, has no long-lived radioactive isotopes, and can be easily purified by use of cold traps, it is an ideal medium for the detection of rare nuclear events. In addition, neon is inexpensive, dense, and transparent to its own scintillation light, making it practical for use in a large self-shielding apparatus. Monte Carlo simulations of gamma ray backgrounds have been performed assuming liquid neon as both shielding and detection medium. Gamma ray events occur with high probability in the outer parts of the detector. In contrast, neutrino scattering events occur uniformly throughout the detector. We discriminate background gamma ray events from events of interest based on a spatial Maximum Likelihood method estimate of event location. Background estimates for CLEAN are presented, as well as an evaluation of the sensitivity of the detector for $p-p$ neutrinos. Given these simulations, the physics potential of the CLEAN approach is evaluated.Comment: 21 pages, 3 figures. Submitted to Astroparticle Physic

Wave Function Based Characteristics of Hybrid Mesons

We propose some extensions of the quark potential model to hybrids, fit them to the lattice data and use them for the purpose of calculating the masses, root mean square radii and wave functions at the origin of the conventional and hybrid charmonium mesons. We treat the ground and excited gluonic field between a quark and an antiquark as in the Born-Oppenheimer expansion, and use the shooting method to numerically solve the required Schr$\ddot{\textrm{o}}$dinger equation for the radial wave functions; from these wave functions we calculate the mesonic properties. For masses we also check through a Crank Nichelson discretization. For hybrid charmonium mesons, we consider the exotic quantum number states with $J^{PC} = 0^{+ -}, 1^{- +}$ and $2^{+ -}$. We also compare our results with the experimentally observed masses and theoretically predicted results of the other models. Our results have implications for scalar form factors, energy shifts, magnetic polarizabilities, decay constants, decay widths and differential cross sections of conventional and hybrid mesons.Comment: 13 pages, 6 figures, Erratum is submitted to EPJ

Genetic Relationships of Crown Rust Resistance, Grain Yield, Test Weight, and Seed Weight in Oat

Integrating selection for agronomic performance and quantitative resistance to crown rust, caused by Puccinia coronata Corda var. avenae W.P. Fraser & Ledingham, in oat (Avena sativa L.) requires an understanding of their genetic relationships. This study was conducted to investigate the genetic relationships of crown rust resistance, grain yield, test weight, and seed weight under both inoculated and fungicide-treated conditions. A Design II mating was performed between 10 oat lines with putative partial resistance to crown rust and nine lines with superior grain yield and grain quality potential. Progenies from this mating were evaluated in both crown rust-inoculated and fungicide-treated plots in four Iowa environments to estimate genetic effects and phenotypic correlations between crown rust resistance and grain yield, seed weight, and test weight under either infection or fungicide-treated conditions. Lines from a random-mated population derived from the same parents were evaluated in three Iowa environments to estimate heritabilities of, and genetic correlations between, these traits. Resistance to crown rust, as measured by area under the disease progress curve (AUDPC), was highly heritable (H = 0.89 on an entry-mean basis), and was favorably correlated with grain yield, seed weight, and test weight measured in crown rust-inoculated plots. AUDPC was unfavorably correlated or uncorrelated with grain yield, test weight, and seed weight measured in fungicide-treated plots. To improve simultaneously crown rust resistance, grain yield, and seed weight under both lower and higher levels of crown rust infection, an optimum selection index can be developed with the genetic parameters estimated in this stud

Time to cancer treatment and reproductive outcomes after fertility preservation among adolescent and young adult women with cancer

Background: Fertility preservation (FP) may be underused after cancer diagnosis because of uncertainty around delays to cancer treatment and subsequent reproductive success. Methods: Women aged 15 to 39 years diagnosed with cancer between 2004 and 2015 were identified from the North Carolina Central Cancer Registry. Use of assisted reproductive technology (ART) after cancer diagnosis between 2004 and 2018 (including FP) was assessed through linkage to the Society for Assisted Reproductive Technology. Linear regression was used to examine time to cancer treatment among women who did (n = 95) or did not (n = 469) use FP. Modified Poisson regression was used to estimate risk ratios (RRs) and 95% CIs for pregnancy and birth based on timing of ART initiation relative to cancer treatment (n = 18 initiated before treatment for FP vs n = 26 initiated after treatment without FP). Results: The median time to cancer treatment was 9 to 33 days longer among women who used FP compared with women who did not, matched on clinical factors. Women who initiated ART before cancer treatment may be more likely to have a live birth given pregnancy compared with women who initiated ART after cancer treatment (age-adjusted RR, 1.47; 95% CI, 0.98-2.23), though this may be affected by the more frequent use of gestational carriers in the former group (47% vs 20% of transfer cycles, respectively). Conclusions: FP delayed gonadotoxic cancer treatment by up to 4.5 weeks, a delay that would not be expected to alter prognosis for many women. Further study of the use of gestational carriers in cancer populations is warranted to better understand its effect on reproductive outcomes

Epigenome-wide association of PTSD from heterogeneous cohorts with a common multi-site analysis pipeline

Compelling evidence suggests that epigenetic mechanisms such as DNA methylation play a role in stress regulation and in the etiologic basis of stress related disorders such as Post traumatic Stress Disorder (PTSD). Here we describe the purpose and methods of an international consortium that was developed to study the role of epigenetics in PTSD. Inspired by the approach used in the Psychiatric Genomics Consortium, we brought together investigators representing seven cohorts with a collective sample size of N = 1147 that included detailed information on trauma exposure, PTSD symptoms, and genome-wide DNA methylation data. The objective of this consortium is to increase the analytical sample size by pooling data and combining expertise so that DNA methylation patterns associated with PTSD can be identified. Several quality control and analytical pipelines were evaluated for their control of genomic inflation and technical artifacts with a joint analysis procedure established to derive comparable data over the cohorts for meta-analysis. We propose methods to deal with ancestry population stratification and type I error inflation and discuss the advantages and disadvantages of applying robust error estimates. To evaluate our pipeline, we report results from an epigenome-wide association study (EWAS) of age, which is a well-characterized phenotype with known epigenetic associations. Overall, while EWAS are highly complex and subject to similar challenges as genome-wide association studies (GWAS), we demonstrate that an epigenetic meta-analysis with a relatively modest sample size can be well-powered to identify epigenetic associations. Our pipeline can be used as a framework for consortium efforts for EWAS