The impact and control of Phytophthora cinnamomi in native and rehabilitated forest ecosystems in Western Australia

Botanists have likened the impact of Phytophthora cinnamomi in Australian plant communities to that of the last ice age, which affected a large number of plant families, genera and species within these families. Phytophthora cinnamomi affects the floristics and structure of many unique plant communities. We discuss the impact of this pathogen and our current knowledge of its biology, genetics and pathology in Western Australian plant communities and the current management strategies used to limit its spread and impact. We hope that the knowledge obtained from some of our experiences in managing this pathogen in Western Australian natural ecosystems will be of some benefit to researchers studying Phytophthora diseases in Quercus, Alnus and Castanea in Europe and America

Structural elucidation of o-linked glycopeptides by high energy collision-induced dissociation

O-linked glycopeptides that bear a GalNAc core with and without the presence of sialic acid have been analyzed by high energy collision-induced dissociation (CID). We show that the CID spectra from the glycosylated precursor ions contain sufficient information to identify the peptide sequence and to determine the glycosylated site(s). Asialo O-linked glycopeptides, previously prepared from a tryptic digest of bovine fetuin were studied. One of the glycopeptides contained only a single Hex (hexose)-HexNAc (N-acetylhexosamine) substitution at Thr262, whereas the other exhibited Hex-HexNAc moieties at both Thr262 and Ser264. In addition, sialo and asialo fetuin glycopeptides from a pronase digest were derivatized with t-butoxycarbonyl-tyrosine, and characterized by high energy CID analysis. The presence of a Galβ(1,3)GalNAc core structure at Ser264 was confirmed by using the substrate specificity of endo-α-N-acetylgalactosaminidase. These studies revealed the presence of a β-galactosidase specific for β(1,4) linkages in the endo-α-N-acetylgalactosaminidase preparation employed. Finally, the relative stability of N-and O-glycosyl bonds to high energy CID is addressed based upon comparison of the behavior of a synthetic N-linked glycopeptide with analogous O-linked structures

Pathogenicity of Phytophthora multivora to Eucalyptus gomphocephala and E. marginata

Since the early 1990s there has been a significant decline of E. gomphocephala, and more recently E. marginata, in the tuart forest in tuart woodland in Yalgorup National Park SW Western Australia, although no satisfactory aetiology has been established to explain the decline. Characteristics of the canopy dieback and decline distribution are reminiscent of other forest declines known to involve Phytophthora soil pathogens and indicate that a Phytophthora species may be involved in the decline. In 2007 isolates of Phytophthora multivora, recently described by (1), were recovered from rhizosphere soil of declining or dead trees of Eucalyptus gomphocephala and E. marginata. For E. gomphocephala and E. marginata, the pathogenicity of P. multivora was tested: ex situ on seedlings using a soil infestation method; and in situ on stems using an under bark infestation method

Phytophthora multivora sp. nov., a new species recovered from declining Eucalyptus, Banksia, Agonis and other plant species in Western Australia

A new Phytophthora species, isolated from rhizosphere soil of declining or dead trees of Eucalyptus gomphocephala, E. marginata, Agonis flexuosa, and another 13 plant species, and from fine roots of E. marginata and collar lesions of Banksia attenuata in Western Australia, is described as Phytophthora multivora sp. nov. It is homothallic and produces semipapillate sporangia, smooth-walled oogonia containing thick-walled oospores, and paragynous antheridia. Although morphologically similar to P. citricola, phylogenetic analyses of the ITS and cox1 gene regions demonstrate that P. multivora is unique. Phytophthora multivora is pathogenic to bark and cambium of E. gomphocephala and E. marginata and is believed to be involved in the decline syndrome of both eucalypt species within the tuart woodland in south-west Western Australia

Equivalent thermo-mechanical parameters for perfect crystals

Thermo-elastic behavior of perfect single crystal is considered. The crystal is represented as a set of interacting particles (atoms). The approach for determination of equivalent continuum values for the discrete system is proposed. Averaging of equations of particles' motion and long wave approximation are used in order to make link between the discrete system and equivalent continuum. Basic balance equations for equivalent continuum are derived from microscopic equations. Macroscopic values such as Piola and Cauchy stress tensors and heat flux are represented via microscopic parameters. Connection between the heat flux and temperature is discussed. Equation of state in Mie-Gruneisen form connecting Cauchy stress tensor with deformation gradient and thermal energy is obtained from microscopic considerations.Comment: To be published in proceedings of IUTAM Simposium on "Vibration Analysis of Structures with Uncertainties", 2009; 14 pages

Glimpses of the Octonions and Quaternions History and Todays Applications in Quantum Physics

Before we dive into the accessibility stream of nowadays indicatory applications of octonions to computer and other sciences and to quantum physics let us focus for a while on the crucially relevant events for todays revival on interest to nonassociativity. Our reflections keep wandering back to the $Brahmagupta$ $Fibonacc$ two square identity and then via the $Euler$ four square identity up to the $Degen$ $Ggraves$ $Cayley$ eight square identity. These glimpses of history incline and invite us to retell the story on how about one month after quaternions have been carved on the $Broughamian$ bridge octonions were discovered by $John$ $Thomas$ $Ggraves$, jurist and mathematician, a friend of $William$ $Rowan$ $Hamilton$. As for today we just mention en passant quaternionic and octonionic quantum mechanics, generalization of $Cauchy$ $Riemann$ equations for octonions and triality principle and $G_2$ group in spinor language in a descriptive way in order not to daunt non specialists. Relation to finite geometries is recalled and the links to the 7stones of seven sphere, seven imaginary octonions units in out of the $Plato$ cave reality applications are appointed . This way we are welcomed back to primary ideas of $Heisenberg$, $Wheeler$ and other distinguished fathers of quantum mechanics and quantum gravity foundations.Comment: 26 pages, 7 figure

Central Charge Reduction and Spacetime Statistics in the Fractional Superstring

Fractional superstrings in the tensor-product formulation experience ``internal projections'' which reduce their effective central charges. Simple expressions for the characters of the resulting effective worldsheet theory are found. All states in the effective theory can be consistently assigned definite spacetime statistics. The projection to the effective theory is shown to be described by the action of a dimension-three current in the original tensor-product theory.Comment: 11 pages (LaTeX), CLNS 92/1168, McGill/92-41 (minor typos corrected

AR and MA representation of partial autocorrelation functions, with applications

We prove a representation of the partial autocorrelation function (PACF), or the Verblunsky coefficients, of a stationary process in terms of the AR and MA coefficients. We apply it to show the asymptotic behaviour of the PACF. We also propose a new definition of short and long memory in terms of the PACF.Comment: Published in Probability Theory and Related Field

Computational Physics on Graphics Processing Units

The use of graphics processing units for scientific computations is an emerging strategy that can significantly speed up various different algorithms. In this review, we discuss advances made in the field of computational physics, focusing on classical molecular dynamics, and on quantum simulations for electronic structure calculations using the density functional theory, wave function techniques, and quantum field theory.Comment: Proceedings of the 11th International Conference, PARA 2012, Helsinki, Finland, June 10-13, 201

A Real Space Description of Magnetic Field Induced Melting in the Charge Ordered Manganites: I. The Clean Limit

We study the melting of charge order in the half doped manganites using a model that incorporates double exchange, antiferromagnetic superexchange, and Jahn-Teller coupling between electrons and phonons. We primarily use a real space Monte Carlo technique to study the phase diagram in terms of applied field $(h)$ and temperature $(T)$, exploring the melting of charge order with increasing $h$ and its recovery on decreasing $h$. We observe hysteresis in this response, and discover that the `field melted' high conductance state can be spatially inhomogeneous even without extrinsic disorder. The hysteretic response plays out in the background of field driven equilibrium phase separation. Our results, exploring $h$, $T$, and the electronic parameter space, are backed up by analysis of simpler limiting cases and a Landau framework for the field response. This paper focuses on our results in the `clean' systems, a companion paper studies the effect of cation disorder on the melting phenomena.Comment: 16 pages, pdflatex, 11 png fig